Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00339
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 409
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00339

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00339 Chr08 13961069-22905882 Chr04 11711844-19790939 mixed High 200 anchors
Chr08 13961069-22905882 Chr04 11711844-19790939 JCVI_TKOH_00339 · 409 gene pairs TkA08G054950 | LXL04_018326 | 86.2% | multi_candidate_from_TK1151 | Complex TkA08G054960 | LXL04_018327 | 98.3% | sequence_supported_annotation_or_model_conflict | Review TkA08G054970 | LXL04_018327 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA08G054980 | LXL04_018329 | 99.2% | multi_source_to_OH1004 | Complex TkA08G055000 | LXL04_018330 | 99.6% | multi_source_to_OH1004 | Complex TkA08G055040 | LXL04_018330 | 97.3% | sequence_supported_annotation_or_model_conflict | Review TkA08G055210 | LXL04_018330 | 97.7% | sequence_supported_annotation_or_model_conflict | Review TkA08G055220 | LXL04_018337 | 86.6% | multi_source_to_OH1004 | Complex TkA08G055230 | LXL04_018338 | 84.3% | multi_source_to_OH1004 | Complex TkA08G055670 | LXL04_018338 | 83.6% | multi_source_to_OH1004 | Complex TkA08G055810 | LXL04_018353 | 100.0% | multi_source_to_OH1004 | Complex TkA08G055990 | LXL04_018354 | 89.0% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00339 Chr08:13961069-22905882 Chr04:11711844-19790939 mixed 409 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 409 · Showing 1–200 · Page 1/3

TkA08G054950 → LXL04_018326
86.2%
TkA08G054960 → LXL04_018327
98.3%
TkA08G054970 → LXL04_018327
100.0%
TkA08G054980 → LXL04_018329
99.2%
TkA08G055000 → LXL04_018330
99.6%
TkA08G055040 → LXL04_018330
97.3%
TkA08G055210 → LXL04_018330
97.7%
TkA08G055220 → LXL04_018337
86.6%
TkA08G055230 → LXL04_018338
84.3%
TkA08G055670 → LXL04_018338
83.6%
TkA08G055810 → LXL04_018353
100.0%
TkA08G055990 → LXL04_018354
89.0%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA08G054950LXL04_018326JCVI_TKOH_0033986.2100.0 / 58.734Complex
TkA08G054960LXL04_018327JCVI_TKOH_0033998.3100.0 / 47.568Review
TkA08G054970LXL04_018327JCVI_TKOH_00339100.099.286 / 37.568Review
TkA08G054980LXL04_018329JCVI_TKOH_0033999.2100.0 / 100.0Complex
TkA08G055000LXL04_018330JCVI_TKOH_0033999.6100.0 / 61.717Complex
TkA08G055040LXL04_018330JCVI_TKOH_0033997.386.866 / 25.939Review
TkA08G055210LXL04_018330JCVI_TKOH_0033997.798.496 / 11.717Review
TkA08G055220LXL04_018337JCVI_TKOH_0033986.6100.0 / 100.0Complex
TkA08G055230LXL04_018338JCVI_TKOH_0033984.3100.0 / 93.654Complex
TkA08G055670LXL04_018338JCVI_TKOH_0033983.693.191 / 47.921Complex
TkA08G055810LXL04_018353JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G055990LXL04_018354JCVI_TKOH_0033989.0100.0 / 99.478Complex
TkA08G056060LXL04_018355JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G056510LXL04_018344JCVI_TKOH_0033996.097.849 / 92.568Strict
TkA08G056560LXL04_018378JCVI_TKOH_0033995.9100.0 / 24.406Review
TkA08G056870LXL04_018352JCVI_TKOH_00339100.0100.0 / 100.0Review
TkA08G056900LXL04_018353JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G056930LXL04_018354JCVI_TKOH_0033998.6100.0 / 38.12Review
TkA08G056940LXL04_018355JCVI_TKOH_0033999.0100.0 / 69.444Complex
TkA08G057090LXL04_018357JCVI_TKOH_0033999.6100.0 / 94.792Strict
TkA08G057120LXL04_018358JCVI_TKOH_0033995.8100.0 / 58.333Review
TkA08G057160LXL04_018360JCVI_TKOH_00339100.0100.0 / 68.831Review
TkA08G057250LXL04_018361JCVI_TKOH_0033991.5100.0 / 89.313Probable
TkA08G057260LXL04_018362JCVI_TKOH_0033998.892.929 / 63.826Complex
TkA08G057270LXL04_018363JCVI_TKOH_0033969.191.111 / 62.736Review
TkA08G057630LXL04_018364JCVI_TKOH_0033993.7100.0 / 36.391Complex
TkA08G057660LXL04_018369JCVI_TKOH_0033998.1100.0 / 93.023Complex
TkA08G057690LXL04_018371JCVI_TKOH_0033999.6100.0 / 74.695Complex
TkA08G057730LXL04_018372JCVI_TKOH_0033999.7100.0 / 100.0Strict
TkA08G057740LXL04_018367JCVI_TKOH_0033986.085.846 / 91.475Complex
TkA08G057770LXL04_018376JCVI_TKOH_0033999.6100.0 / 100.0Strict
TkA08G057880LXL04_018378JCVI_TKOH_0033999.599.468 / 46.809Review
TkA08G057960LXL04_018382JCVI_TKOH_0033999.7100.0 / 100.0Complex
TkA08G057970LXL04_018383JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G058030LXL04_018384JCVI_TKOH_0033999.898.699 / 81.193Complex
TkA08G058140LXL04_018386JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G058180LXL04_018387JCVI_TKOH_0033999.5100.0 / 100.0Strict
TkA08G058190LXL04_018388JCVI_TKOH_0033998.598.485 / 85.526Strict
TkA08G058200LXL04_018389JCVI_TKOH_00339100.0100.0 / 69.022Review
TkA08G058220LXL04_018390JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G058390LXL04_018391JCVI_TKOH_0033999.0100.0 / 100.0Strict
TkA08G058550LXL04_018393JCVI_TKOH_0033999.2100.0 / 98.936Strict
TkA08G058560LXL04_018394JCVI_TKOH_0033993.1100.0 / 100.0Probable
TkA08G058570LXL04_018395JCVI_TKOH_0033990.491.743 / 77.732Probable
TkA08G058590LXL04_018402JCVI_TKOH_0033971.5100.0 / 31.556Complex
TkA08G058600LXL04_018402JCVI_TKOH_0033960.599.346 / 36.67Complex
TkA08G058670LXL04_018402JCVI_TKOH_0033972.099.195 / 81.284Complex
TkA08G058710LXL04_018398JCVI_TKOH_00339100.055.431 / 100.0Review
TkA08G058720LXL04_018399JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G058740LXL04_018400JCVI_TKOH_0033994.2100.0 / 93.844Probable
TkA08G058790LXL04_018402JCVI_TKOH_0033999.7100.0 / 84.222Review
TkA08G058810LXL04_018403JCVI_TKOH_0033997.2100.0 / 93.418Strict
TkA08G058820LXL04_018404JCVI_TKOH_00339100.0100.0 / 99.399Strict
TkA08G058830LXL04_018405JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G058870LXL04_018406JCVI_TKOH_0033997.997.101 / 97.989Complex
TkA08G058880LXL04_018407JCVI_TKOH_0033996.6100.0 / 100.0Strict
TkA08G058990LXL04_018414JCVI_TKOH_0033999.3100.0 / 100.0Strict
TkA08G059040LXL04_018416JCVI_TKOH_0033999.9100.0 / 96.757Complex
TkA08G059180LXL04_018419JCVI_TKOH_0033996.5100.0 / 100.0Strict
TkA08G059200LXL04_018418JCVI_TKOH_0033999.690.311 / 69.786Complex
TkA08G059210LXL04_018420JCVI_TKOH_0033997.0100.0 / 86.598Strict
TkA08G059290LXL04_018422JCVI_TKOH_0033995.1100.0 / 100.0Strict
TkA08G059300LXL04_018423JCVI_TKOH_0033994.4100.0 / 92.564Complex
TkA08G059310LXL04_018424JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G059360LXL04_018426JCVI_TKOH_0033999.2100.0 / 100.0Strict
TkA08G059390LXL04_018427JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G059480LXL04_018428JCVI_TKOH_0033990.6100.0 / 100.0Probable
TkA08G059490LXL04_018429JCVI_TKOH_0033983.388.889 / 64.621Complex
TkA08G059610LXL04_018430JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G059620LXL04_018431JCVI_TKOH_0033963.3100.0 / 100.0Review
TkA08G059740LXL04_018433JCVI_TKOH_0033988.292.908 / 62.203Review
TkA08G059890LXL04_018434JCVI_TKOH_0033991.794.581 / 14.534Complex
TkA08G060050LXL04_018437JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G060070LXL04_018438JCVI_TKOH_0033998.597.345 / 86.614Strict
TkA08G060540LXL04_018442JCVI_TKOH_0033997.8100.0 / 100.0Review
TkA08G060560LXL04_018443JCVI_TKOH_0033979.8100.0 / 100.0Complex
TkA08G060660LXL04_018444JCVI_TKOH_0033996.5100.0 / 100.0Complex
TkA08G061000LXL04_018445JCVI_TKOH_0033998.2100.0 / 100.0Complex
TkA08G061100LXL04_018446JCVI_TKOH_0033990.6100.0 / 71.698Probable
TkA08G061340LXL04_018447JCVI_TKOH_0033995.6100.0 / 99.631Strict
TkA08G061880LXL04_018453JCVI_TKOH_0033996.9100.0 / 97.863Complex
TkA08G062450LXL04_018459JCVI_TKOH_0033997.6100.0 / 81.538Strict
TkA08G062710LXL04_018461JCVI_TKOH_00339100.047.0 / 38.843Review
TkA08G062740LXL04_018462JCVI_TKOH_0033998.896.578 / 36.286Review
TkA08G062750LXL04_018462JCVI_TKOH_0033976.891.613 / 23.429Complex
TkA08G062850LXL04_018464JCVI_TKOH_00339100.088.535 / 45.13Review
TkA08G062860LXL04_018465JCVI_TKOH_0033996.389.338 / 59.459Review
TkA08G062900LXL04_018466JCVI_TKOH_0033992.297.814 / 50.43Review
TkA08G062910LXL04_018467JCVI_TKOH_00339100.097.333 / 67.281Complex
TkA08G062930LXL04_018469JCVI_TKOH_0033974.699.059 / 93.95Review
TkA08G062940LXL04_018470JCVI_TKOH_0033998.384.211 / 47.047Review
TkA08G063510LXL04_018476JCVI_TKOH_0033999.374.68 / 91.824Probable
TkA08G063530LXL04_018478JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G063540LXL04_018479JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G063560LXL04_018480JCVI_TKOH_0033999.895.597 / 100.0Strict
TkA08G063580LXL04_018481JCVI_TKOH_0033997.0100.0 / 100.0Strict
TkA08G063610LXL04_018482JCVI_TKOH_0033999.1100.0 / 38.561Review
TkA08G063640LXL04_018483JCVI_TKOH_0033997.494.227 / 85.047Strict
TkA08G063740LXL04_018485JCVI_TKOH_0033999.7100.0 / 100.0Strict
TkA08G063830LXL04_018487JCVI_TKOH_0033997.8100.0 / 42.4Review
TkA08G064010LXL04_018490JCVI_TKOH_0033999.6100.0 / 100.0Strict
TkA08G064040LXL04_018491JCVI_TKOH_0033999.6100.0 / 100.0Strict
TkA08G064060LXL04_018492JCVI_TKOH_00339100.099.16 / 72.615Probable
TkA08G064590LXL04_018493JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G064610LXL04_018495JCVI_TKOH_0033999.3100.0 / 100.0Complex
TkA08G064620LXL04_018496JCVI_TKOH_0033998.2100.0 / 100.0Complex
TkA08G064660LXL04_018497JCVI_TKOH_0033999.599.483 / 98.718Strict
TkA08G064700LXL04_018498JCVI_TKOH_0033997.794.203 / 80.745Review
TkA08G064710LXL04_018499JCVI_TKOH_0033976.1100.0 / 23.354Complex
TkA08G064750LXL04_018500JCVI_TKOH_0033999.9100.0 / 80.225Complex
TkA08G064810LXL04_018501JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G065060LXL04_018493JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G065080LXL04_018495JCVI_TKOH_00339100.099.074 / 51.691Review
TkA08G065090LXL04_018496JCVI_TKOH_0033998.2100.0 / 100.0Complex
TkA08G065110LXL04_018498JCVI_TKOH_0033995.3100.0 / 78.571Complex
TkA08G065120LXL04_018499JCVI_TKOH_0033997.4100.0 / 100.0Strict
TkA08G065140LXL04_018500JCVI_TKOH_0033991.6100.0 / 80.225Complex
TkA08G065170LXL04_018506JCVI_TKOH_0033975.498.483 / 54.825Complex
TkA08G065210LXL04_018504JCVI_TKOH_0033986.0100.0 / 100.0Complex
TkA08G065220LXL04_018501JCVI_TKOH_0033999.3100.0 / 97.464Complex
TkA08G065230LXL04_018502JCVI_TKOH_0033999.8100.0 / 100.0Complex
TkA08G065240LXL04_018503JCVI_TKOH_0033999.6100.0 / 100.0Complex
TkA08G065480LXL04_018504JCVI_TKOH_0033999.7100.0 / 100.0Complex
TkA08G065490LXL04_018506JCVI_TKOH_0033999.979.442 / 43.84Review
TkA08G065590LXL04_018509JCVI_TKOH_00339100.094.931 / 35.826Review
TkA08G065620LXL04_018509JCVI_TKOH_0033999.2100.0 / 43.478Review
TkA08G065650LXL04_018508JCVI_TKOH_0033973.799.556 / 99.539Complex
TkA08G065710LXL04_018511JCVI_TKOH_0033999.5100.0 / 100.0Complex
TkA08G065720LXL04_018509JCVI_TKOH_0033971.695.434 / 36.696Complex
TkA08G065920LXL04_018513JCVI_TKOH_0033999.0100.0 / 100.0Strict
TkA08G066060LXL04_018516JCVI_TKOH_0033983.9100.0 / 100.0Complex
TkA08G066080LXL04_018517JCVI_TKOH_00339100.0100.0 / 100.0Review
TkA08G066090LXL04_018518JCVI_TKOH_0033997.6100.0 / 100.0Complex
TkA08G066110LXL04_018519JCVI_TKOH_0033999.3100.0 / 100.0Strict
TkA08G066130LXL04_018521JCVI_TKOH_0033999.2100.0 / 100.0Strict
TkA08G066160LXL04_018522JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G066480LXL04_018524JCVI_TKOH_0033999.7100.0 / 100.0Strict
TkA08G066490LXL04_018525JCVI_TKOH_0033999.3100.0 / 88.105Strict
TkA08G066500LXL04_018526JCVI_TKOH_0033970.8100.0 / 100.0Review
TkA08G066510LXL04_018527JCVI_TKOH_0033995.994.555 / 73.505Probable
TkA08G066520LXL04_018528JCVI_TKOH_0033999.4100.0 / 96.746Strict
TkA08G066550LXL04_018529JCVI_TKOH_0033998.690.879 / 79.261Probable
TkA08G066560LXL04_018530JCVI_TKOH_0033995.7100.0 / 100.0Strict
TkA08G066610LXL04_018531JCVI_TKOH_0033999.999.526 / 100.0Strict
TkA08G066620LXL04_018532JCVI_TKOH_0033999.898.771 / 77.308Probable
TkA08G066630LXL04_018533JCVI_TKOH_0033998.1100.0 / 100.0Strict
TkA08G066660LXL04_018534JCVI_TKOH_0033992.7100.0 / 100.0Probable
TkA08G066700LXL04_018535JCVI_TKOH_0033999.1100.0 / 100.0Strict
TkA08G066710LXL04_018536JCVI_TKOH_0033999.097.448 / 99.057Strict
TkA08G066720LXL04_018537JCVI_TKOH_00339100.0100.0 / 85.0Complex
TkA08G066730LXL04_018538JCVI_TKOH_0033997.0100.0 / 100.0Strict
TkA08G066740LXL04_018539JCVI_TKOH_00339100.0100.0 / 90.408Complex
TkA08G066750LXL04_018540JCVI_TKOH_0033999.6100.0 / 100.0Complex
TkA08G066810LXL04_018542JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G066980LXL04_018543JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G067020LXL04_018543JCVI_TKOH_0033956.079.455 / 83.82Complex
TkA08G067390LXL04_018546JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G067630LXL04_018547JCVI_TKOH_0033997.399.856 / 44.036Review
TkA08G067640LXL04_018548JCVI_TKOH_0033999.0100.0 / 100.0Strict
TkA08G067660LXL04_018549JCVI_TKOH_0033961.392.793 / 23.846Complex
TkA08G067670LXL04_018549JCVI_TKOH_0033996.498.582 / 26.538Review
TkA08G067680LXL04_018549JCVI_TKOH_0033976.3100.0 / 42.115Complex
TkA08G067720LXL04_018550JCVI_TKOH_0033999.0100.0 / 93.395Strict
TkA08G067820LXL04_018551JCVI_TKOH_0033999.3100.0 / 100.0Strict
TkA08G067900LXL04_018553JCVI_TKOH_0033997.699.707 / 54.487Review
TkA08G068050LXL04_018556JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G068220LXL04_018560JCVI_TKOH_0033999.1100.0 / 95.568Complex
TkA08G068240LXL04_018563JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G068250LXL04_018564JCVI_TKOH_0033987.7100.0 / 94.215Review
TkA08G068270LXL04_018565JCVI_TKOH_0033999.4100.0 / 79.048Probable
TkA08G068470LXL04_018566JCVI_TKOH_0033999.8100.0 / 100.0Strict
TkA08G068510LXL04_018567JCVI_TKOH_0033999.5100.0 / 100.0Complex
TkA08G068520LXL04_018568JCVI_TKOH_0033999.6100.0 / 100.0Complex
TkA08G068530LXL04_018570JCVI_TKOH_0033975.1100.0 / 100.0Review
TkA08G068730LXL04_018571JCVI_TKOH_0033999.5100.0 / 88.889Strict
TkA08G068780LXL04_018573JCVI_TKOH_0033997.188.235 / 100.0Strict
TkA08G068880LXL04_018574JCVI_TKOH_00339100.096.078 / 57.988Review
TkA08G069020LXL04_018577JCVI_TKOH_0033996.1100.0 / 100.0Strict
TkA08G069030LXL04_018578JCVI_TKOH_0033998.9100.0 / 100.0Strict
TkA08G069180LXL04_018580JCVI_TKOH_0033992.296.257 / 29.654Complex
TkA08G069380LXL04_018583JCVI_TKOH_0033999.6100.0 / 100.0Complex
TkA08G069500LXL04_018585JCVI_TKOH_0033999.7100.0 / 100.0Strict
TkA08G069580LXL04_018586JCVI_TKOH_0033999.579.913 / 76.569Probable
TkA08G069670LXL04_018587JCVI_TKOH_00339100.086.425 / 88.018Complex
TkA08G069690LXL04_018588JCVI_TKOH_0033999.6100.0 / 95.828Complex
TkA08G069790LXL04_018589JCVI_TKOH_0033983.675.841 / 85.38Review
TkA08G069800LXL04_018590JCVI_TKOH_00339100.0100.0 / 100.0Strict
TkA08G069820LXL04_018591JCVI_TKOH_0033997.0100.0 / 100.0Strict
TkA08G069830LXL04_018592JCVI_TKOH_0033999.397.826 / 95.07Strict
TkA08G069860LXL04_018593JCVI_TKOH_0033999.198.982 / 96.449Review
TkA08G069900LXL04_018595JCVI_TKOH_00339100.0100.0 / 100.0Review
TkA08G069910LXL04_018596JCVI_TKOH_00339100.0100.0 / 100.0Complex
TkA08G069920LXL04_018597JCVI_TKOH_0033999.6100.0 / 100.0Strict
TkA08G070000LXL04_018598JCVI_TKOH_0033994.9100.0 / 100.0Probable
TkA08G071450LXL04_018602JCVI_TKOH_0033988.487.805 / 15.052Complex
TkA08G071530LXL04_018605JCVI_TKOH_0033946.994.444 / 54.605Complex
TkA08G071560LXL04_018605JCVI_TKOH_0033993.599.624 / 91.776Complex
TkA08G072050LXL04_018606JCVI_TKOH_0033990.595.784 / 75.588Probable
TkA08G072060LXL04_018607JCVI_TKOH_0033998.9100.0 / 100.0Strict
TkA08G072070LXL04_018608JCVI_TKOH_0033999.4100.0 / 100.0Complex