Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00192
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 180
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00192

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00192 Chr04 30306897-35121832 Chr08 21506633-26708480 mixed High 180 anchors
Chr04 30306897-35121832 Chr08 21506633-26708480 JCVI_TKOH_00192 · 180 gene pairs TkA04G116590 | LXL04_035650 | 99.2% | RBH_high_identity_coverage_synteny | Strict TkA04G116610 | LXL04_035649 | 99.7% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA04G116870 | LXL04_035647 | 97.2% | RBH_high_identity_coverage_synteny | Strict TkA04G116880 | LXL04_035646 | 98.8% | multi_source_to_OH1004 | Complex TkA04G116890 | LXL04_035645 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA04G116900 | LXL04_035645 | 99.7% | sequence_supported_annotation_or_model_conflict | Review TkA04G116970 | LXL04_035644 | 94.3% | RBH_sequence_supported | Probable TkA04G116980 | LXL04_035643 | 99.1% | RBH_sequence_supported | Probable TkA04G116990 | LXL04_035642 | 100.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA04G117280 | LXL04_035641 | 99.6% | RBH_high_identity_coverage_synteny | Strict TkA04G117950 | LXL04_035634 | 100.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA04G117960 | LXL04_035633 | 97.5% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00192 Chr04:30306897-35121832 Chr08:21506633-26708480 mixed 180 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 180 · Showing 1–180 · Page 1/1

TkA04G116590 → LXL04_035650
99.2%
TkA04G116610 → LXL04_035649
99.7%
TkA04G116870 → LXL04_035647
97.2%
TkA04G116880 → LXL04_035646
98.8%
TkA04G116890 → LXL04_035645
100.0%
TkA04G116900 → LXL04_035645
99.7%
TkA04G116970 → LXL04_035644
94.3%
TkA04G116980 → LXL04_035643
99.1%
TkA04G116990 → LXL04_035642
100.0%
TkA04G117280 → LXL04_035641
99.6%
TkA04G117950 → LXL04_035634
100.0%
TkA04G117960 → LXL04_035633
97.5%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA04G116590LXL04_035650JCVI_TKOH_0019299.2100.0 / 100.0Strict
TkA04G116610LXL04_035649JCVI_TKOH_0019299.7100.0 / 100.0Review
TkA04G116870LXL04_035647JCVI_TKOH_0019297.298.628 / 100.0Strict
TkA04G116880LXL04_035646JCVI_TKOH_0019298.8100.0 / 90.678Complex
TkA04G116890LXL04_035645JCVI_TKOH_00192100.0100.0 / 35.648Review
TkA04G116900LXL04_035645JCVI_TKOH_0019299.799.446 / 55.401Review
TkA04G116970LXL04_035644JCVI_TKOH_0019294.3100.0 / 91.407Probable
TkA04G116980LXL04_035643JCVI_TKOH_0019299.1100.0 / 71.318Probable
TkA04G116990LXL04_035642JCVI_TKOH_00192100.089.103 / 60.435Review
TkA04G117280LXL04_035641JCVI_TKOH_0019299.6100.0 / 100.0Strict
TkA04G117950LXL04_035634JCVI_TKOH_00192100.06.835 / 4.047Review
TkA04G117960LXL04_035633JCVI_TKOH_0019297.5100.0 / 100.0Strict
TkA04G118130LXL04_035632JCVI_TKOH_0019299.3100.0 / 100.0Complex
TkA04G118340LXL04_035666JCVI_TKOH_00192100.0100.0 / 100.0Complex
TkA04G118360LXL04_035667JCVI_TKOH_0019297.297.778 / 75.285Probable
TkA04G119320LXL04_035630JCVI_TKOH_0019298.5100.0 / 100.0Strict
TkA04G119370LXL04_035629JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G119690LXL04_035625JCVI_TKOH_0019291.4100.0 / 100.0Probable
TkA04G119740LXL04_035624JCVI_TKOH_0019298.791.977 / 76.346Probable
TkA04G119750LXL04_035623JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G120180LXL04_035619JCVI_TKOH_0019299.698.438 / 60.837Review
TkA04G120270LXL04_035618JCVI_TKOH_0019299.496.341 / 76.329Review
TkA04G120430LXL04_035616JCVI_TKOH_0019298.196.341 / 60.769Complex
TkA04G120650LXL04_035613JCVI_TKOH_0019296.592.083 / 99.13Strict
TkA04G121240LXL04_035610JCVI_TKOH_00192100.0100.0 / 100.0Complex
TkA04G121280LXL04_035608JCVI_TKOH_0019298.6100.0 / 100.0Strict
TkA04G121510LXL04_035602JCVI_TKOH_0019281.415.985 / 10.116Review
TkA04G121570LXL04_035598JCVI_TKOH_0019299.8100.0 / 100.0Strict
TkA04G121580LXL04_035597JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G121590LXL04_035595JCVI_TKOH_0019292.4100.0 / 100.0Complex
TkA04G121640LXL04_035593JCVI_TKOH_0019298.4100.0 / 86.079Strict
TkA04G121650LXL04_035592JCVI_TKOH_0019266.4100.0 / 35.311Complex
TkA04G121680LXL04_035591JCVI_TKOH_0019292.0100.0 / 85.141Complex
TkA04G121700LXL04_035590JCVI_TKOH_0019297.5100.0 / 84.16Strict
TkA04G121800LXL04_035587JCVI_TKOH_0019298.6100.0 / 100.0Strict
TkA04G121990LXL04_035585JCVI_TKOH_0019296.3100.0 / 100.0Strict
TkA04G122000LXL04_035584JCVI_TKOH_0019292.8100.0 / 100.0Probable
TkA04G122220LXL04_035580JCVI_TKOH_00192100.0100.0 / 69.488Review
TkA04G122440LXL04_035578JCVI_TKOH_0019298.0100.0 / 96.893Strict
TkA04G122520LXL04_035576JCVI_TKOH_0019273.489.286 / 54.331Complex
TkA04G122690LXL04_035576JCVI_TKOH_0019298.7100.0 / 100.0Complex
TkA04G122700LXL04_035575JCVI_TKOH_0019299.1100.0 / 100.0Strict
TkA04G122710LXL04_035574JCVI_TKOH_0019299.796.21 / 68.465Review
TkA04G122720LXL04_035573JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G122750LXL04_035572JCVI_TKOH_0019297.9100.0 / 100.0Strict
TkA04G122760LXL04_035571JCVI_TKOH_00192100.074.822 / 69.079Review
TkA04G122900LXL04_035570JCVI_TKOH_0019298.1100.0 / 100.0Strict
TkA04G122960LXL04_035569JCVI_TKOH_0019298.699.374 / 93.834Complex
TkA04G122970LXL04_035568JCVI_TKOH_0019295.1100.0 / 57.803Review
TkA04G123180LXL04_035567JCVI_TKOH_0019299.2100.0 / 100.0Strict
TkA04G123190LXL04_035566JCVI_TKOH_00192100.0100.0 / 100.0Complex
TkA04G123240LXL04_035565JCVI_TKOH_0019299.698.317 / 65.27Review
TkA04G123380LXL04_035564JCVI_TKOH_00192100.0100.0 / 100.0Review
TkA04G123740LXL04_035560JCVI_TKOH_0019299.8100.0 / 100.0Strict
TkA04G123750LXL04_035559JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G123760LXL04_035558JCVI_TKOH_0019299.693.05 / 100.0Strict
TkA04G123790LXL04_035556JCVI_TKOH_0019248.283.832 / 73.988Complex
TkA04G123840LXL04_035556JCVI_TKOH_00192100.0100.0 / 98.844Complex
TkA04G123850LXL04_035555JCVI_TKOH_00192100.086.667 / 42.162Review
TkA04G123890LXL04_035554JCVI_TKOH_0019299.0100.0 / 100.0Complex
TkA04G123920LXL04_035553JCVI_TKOH_00192100.0100.0 / 100.0Complex
TkA04G123930LXL04_035552JCVI_TKOH_0019299.6100.0 / 100.0Complex
TkA04G124150LXL04_035548JCVI_TKOH_0019277.397.163 / 28.066Complex
TkA04G124310LXL04_035547JCVI_TKOH_0019279.489.286 / 57.653Complex
TkA04G124350LXL04_035546JCVI_TKOH_0019299.599.746 / 75.53Complex
TkA04G124370LXL04_035544JCVI_TKOH_0019298.188.136 / 88.169Complex
TkA04G124380LXL04_035543JCVI_TKOH_0019262.264.865 / 74.242Review
TkA04G124400LXL04_035542JCVI_TKOH_0019297.4100.0 / 100.0Strict
TkA04G124470LXL04_035541JCVI_TKOH_0019299.0100.0 / 100.0Complex
TkA04G124480LXL04_035540JCVI_TKOH_0019294.0100.0 / 100.0Complex
TkA04G124500LXL04_035539JCVI_TKOH_0019299.8100.0 / 100.0Strict
TkA04G124520LXL04_035538JCVI_TKOH_0019297.5100.0 / 85.751Strict
TkA04G124680LXL04_035536JCVI_TKOH_0019299.0100.0 / 100.0Complex
TkA04G124690LXL04_035533JCVI_TKOH_00192100.0100.0 / 100.0Complex
TkA04G124700LXL04_035532JCVI_TKOH_0019299.3100.0 / 100.0Strict
TkA04G124760LXL04_035531JCVI_TKOH_0019289.496.178 / 37.376Complex
TkA04G124770LXL04_035531JCVI_TKOH_0019287.5100.0 / 45.545Complex
TkA04G124840LXL04_035531JCVI_TKOH_0019270.994.872 / 37.376Complex
TkA04G124850LXL04_035531JCVI_TKOH_0019280.799.482 / 47.525Complex
TkA04G124880LXL04_035530JCVI_TKOH_0019299.5100.0 / 100.0Strict
TkA04G124900LXL04_035528JCVI_TKOH_00192100.0100.0 / 71.118Probable
TkA04G125090LXL04_035525JCVI_TKOH_0019296.491.866 / 100.0Review
TkA04G125180LXL04_035523JCVI_TKOH_0019299.0100.0 / 100.0Review
TkA04G125560LXL04_035521JCVI_TKOH_0019286.488.27 / 49.376Complex
TkA04G125680LXL04_035520JCVI_TKOH_0019299.2100.0 / 100.0Strict
TkA04G125700LXL04_035519JCVI_TKOH_0019299.4100.0 / 100.0Strict
TkA04G125710LXL04_035516JCVI_TKOH_00192100.073.31 / 68.896Review
TkA04G125720LXL04_035515JCVI_TKOH_0019298.193.041 / 99.18Strict
TkA04G125740LXL04_035514JCVI_TKOH_0019282.977.165 / 66.467Complex
TkA04G125800LXL04_035513JCVI_TKOH_0019286.5100.0 / 100.0Review
TkA04G126060LXL04_035510JCVI_TKOH_00192100.0100.0 / 93.458Complex
TkA04G126110LXL04_035509JCVI_TKOH_0019299.7100.0 / 100.0Review
TkA04G126120LXL04_035508JCVI_TKOH_0019299.898.284 / 100.0Complex
TkA04G126360LXL04_035506JCVI_TKOH_00192100.099.6 / 99.6Review
TkA04G126430LXL04_035508JCVI_TKOH_0019295.296.923 / 30.0Review
TkA04G126480LXL04_035504JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G126490LXL04_035503JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G126550LXL04_035501JCVI_TKOH_0019298.4100.0 / 87.113Strict
TkA04G126560LXL04_035500JCVI_TKOH_0019291.389.085 / 67.828Complex
TkA04G126690LXL04_035498JCVI_TKOH_0019287.998.547 / 94.412Review
TkA04G126840LXL04_035497JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G127100LXL04_035496JCVI_TKOH_0019296.321.26 / 18.75Complex
TkA04G127110LXL04_035494JCVI_TKOH_0019299.765.265 / 96.091Review
TkA04G127170LXL04_035492JCVI_TKOH_0019294.389.897 / 51.553Review
TkA04G127200LXL04_035491JCVI_TKOH_00192100.0100.0 / 86.792Strict
TkA04G127380LXL04_035490JCVI_TKOH_0019298.8100.0 / 100.0Complex
TkA04G127390LXL04_035489JCVI_TKOH_0019299.5100.0 / 100.0Strict
TkA04G127400LXL04_035488JCVI_TKOH_00192100.0100.0 / 76.291Probable
TkA04G127430LXL04_035487JCVI_TKOH_0019299.9100.0 / 100.0Strict
TkA04G127580LXL04_035484JCVI_TKOH_00192100.060.335 / 23.894Complex
TkA04G127600LXL04_035483JCVI_TKOH_0019288.4100.0 / 100.0Complex
TkA04G127680LXL04_035482JCVI_TKOH_0019296.797.685 / 69.752Review
TkA04G127710LXL04_035481JCVI_TKOH_0019284.638.783 / 13.648Complex
TkA04G127730LXL04_035480JCVI_TKOH_0019289.983.735 / 39.211Review
TkA04G127800LXL04_035478JCVI_TKOH_0019299.7100.0 / 100.0Strict
TkA04G127860LXL04_035477JCVI_TKOH_0019296.5100.0 / 100.0Strict
TkA04G127880LXL04_035476JCVI_TKOH_0019298.8100.0 / 100.0Strict
TkA04G127920LXL04_035474JCVI_TKOH_0019299.4100.0 / 51.133Review
TkA04G128060LXL04_035473JCVI_TKOH_0019299.8100.0 / 99.683Strict
TkA04G128540LXL04_035470JCVI_TKOH_0019299.694.444 / 81.787Strict
TkA04G128560LXL04_035469JCVI_TKOH_00192100.0100.0 / 100.0Complex
TkA04G128570LXL04_035468JCVI_TKOH_0019298.191.789 / 77.037Complex
TkA04G128660LXL04_035460JCVI_TKOH_0019298.1100.0 / 100.0Complex
TkA04G128670LXL04_035458JCVI_TKOH_0019299.885.779 / 62.445Complex
TkA04G129130LXL04_035469JCVI_TKOH_00192100.0100.0 / 100.0Complex
TkA04G129320LXL04_035460JCVI_TKOH_0019297.7100.0 / 100.0Complex
TkA04G129330LXL04_035458JCVI_TKOH_0019299.6100.0 / 58.26Review
TkA04G129610LXL04_035457JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G129650LXL04_035456JCVI_TKOH_0019299.799.699 / 88.032Strict
TkA04G129660LXL04_035455JCVI_TKOH_0019299.498.788 / 94.767Strict
TkA04G129690LXL04_035454JCVI_TKOH_0019299.599.252 / 43.688Review
TkA04G129720LXL04_035453JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G129730LXL04_035452JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G129750LXL04_035451JCVI_TKOH_0019292.593.048 / 17.143Review
TkA04G129870LXL04_035450JCVI_TKOH_0019298.6100.0 / 100.0Strict
TkA04G130330LXL04_035447JCVI_TKOH_0019295.7100.0 / 100.0Complex
TkA04G130430LXL04_035447JCVI_TKOH_0019299.0100.0 / 100.0Review
TkA04G130540LXL04_035447JCVI_TKOH_0019299.292.765 / 73.706Complex
TkA04G130610LXL04_035445JCVI_TKOH_00192100.059.296 / 46.275Review
TkA04G130900LXL04_035441JCVI_TKOH_0019298.9100.0 / 60.093Complex
TkA04G130910LXL04_035440JCVI_TKOH_0019298.698.653 / 55.81Review
TkA04G130920LXL04_035439JCVI_TKOH_0019297.8100.0 / 100.0Strict
TkA04G130930LXL04_035437JCVI_TKOH_0019297.198.009 / 75.986Probable
TkA04G130940LXL04_035436JCVI_TKOH_0019297.893.243 / 100.0Strict
TkA04G130950LXL04_035435JCVI_TKOH_0019298.5100.0 / 100.0Strict
TkA04G131160LXL04_035434JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G131230LXL04_035433JCVI_TKOH_0019295.0100.0 / 100.0Review
TkA04G131240LXL04_035432JCVI_TKOH_00192100.084.043 / 45.533Review
TkA04G131250LXL04_035431JCVI_TKOH_0019298.0100.0 / 100.0Strict
TkA04G131270LXL04_035430JCVI_TKOH_0019299.6100.0 / 93.238Review
TkA04G131590LXL04_035429JCVI_TKOH_0019299.487.64 / 100.0Strict
TkA04G131610LXL04_035428JCVI_TKOH_0019298.498.93 / 69.811Review
TkA04G131630LXL04_035427JCVI_TKOH_0019299.2100.0 / 100.0Strict
TkA04G131930LXL04_035423JCVI_TKOH_0019298.5100.0 / 100.0Complex
TkA04G132130LXL04_035422JCVI_TKOH_0019299.6100.0 / 92.659Strict
TkA04G132210LXL04_035421JCVI_TKOH_0019292.791.026 / 98.45Complex
TkA04G132240LXL04_035420JCVI_TKOH_0019299.2100.0 / 23.892Review
TkA04G132260LXL04_035419JCVI_TKOH_0019298.8100.0 / 37.246Review
TkA04G132270LXL04_035417JCVI_TKOH_0019296.2100.0 / 100.0Complex
TkA04G132340LXL04_035417JCVI_TKOH_0019299.293.75 / 97.701Complex
TkA04G132350LXL04_035415JCVI_TKOH_0019299.5100.0 / 100.0Strict
TkA04G132430LXL04_035414JCVI_TKOH_0019299.395.425 / 94.397Strict
TkA04G132540LXL04_035412JCVI_TKOH_00192100.0100.0 / 100.0Complex
TkA04G132580LXL04_035411JCVI_TKOH_00192100.066.346 / 65.403Review
TkA04G132590LXL04_035410JCVI_TKOH_00192100.0100.0 / 100.0Strict
TkA04G132600LXL04_035408JCVI_TKOH_0019297.093.247 / 95.103Strict
TkA04G132890LXL04_035407JCVI_TKOH_0019299.3100.0 / 100.0Review
TkA04G132990LXL04_035405JCVI_TKOH_0019298.3100.0 / 100.0Strict
TkA04G133010LXL04_035404JCVI_TKOH_0019298.665.741 / 62.832Complex
TkA04G133260LXL04_035402JCVI_TKOH_00192100.0100.0 / 94.306Review
TkA04G133270LXL04_035401JCVI_TKOH_00192100.099.524 / 88.936Strict
TkA04G133280LXL04_035400JCVI_TKOH_0019298.7100.0 / 100.0Strict
TkA04G133480LXL04_035398JCVI_TKOH_00192100.077.51 / 78.776Probable
TkA04G133810LXL04_035395JCVI_TKOH_0019299.7100.0 / 88.776Complex
TkA04G134040LXL04_035394JCVI_TKOH_0019294.127.717 / 14.206Complex
TkA04G134240LXL04_035389JCVI_TKOH_00192100.082.816 / 50.217Complex
TkA04G134370LXL04_035388JCVI_TKOH_0019298.194.625 / 94.321Review
TkA04G134740LXL04_035385JCVI_TKOH_00192100.0100.0 / 100.0Complex
TkA04G134930LXL04_035383JCVI_TKOH_0019284.1100.0 / 100.0Complex
TkA04G135010LXL04_035382JCVI_TKOH_0019299.1100.0 / 100.0Strict