LXL04_035552 | RubberDandelionOmics

Gene overview

LXL04_035552

Reference: OH-1004 Chr: Chr08 Coordinates: 24431552-24432577 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

777 bp · LXL04_035552|LXL04_035552|OH1004|cDNA

ATGCCGCCGCGTAGGTACGCCGTCGGGAGAGCCGATGAGGCCACACACCCAGACTCCGCACGCGCCACCTTGTCGGAGTTCCTTTCCACCTTCATCTTCGTCTTCGCCGCCGAAGGCTCCGTCCTAGCTCTTGATAAGATGTACGGTCGTGAGCATACACAGGGAGGAGCTGGGCTGCTGCTGGTGGCGCTGGCTCATGCGCTGTCATTGTTCGCCGCCATCGCGTCGAGTTTTAACGTGTCCGGTGGACACATAAATCC...

CDS

Download CDS FASTA

777 bp · LXL04_035552|LXL04_035552|OH1004|CDS

ATGCCGCCGCGTAGGTACGCCGTCGGGAGAGCCGATGAGGCCACACACCCAGACTCCGCACGCGCCACCTTGTCGGAGTTCCTTTCCACCTTCATCTTCGTCTTCGCCGCCGAAGGCTCCGTCCTAGCTCTTGATAAGATGTACGGTCGTGAGCATACACAGGGAGGAGCTGGGCTGCTGCTGGTGGCGCTGGCTCATGCGCTGTCATTGTTCGCCGCCATCGCGTCGAGTTTTAACGTGTCCGGTGGACACATAAATCC...

Protein

Download Protein FASTA

258 aa · LXL04_035552|LXL04_035552|OH1004|PROTEIN

MPPRRYAVGRADEATHPDSARATLSEFLSTFIFVFAAEGSVLALDKMYGREHTQGGAGLLLVALAHALSLFAAIASSFNVSGGHINPAVTFGTLVAGRVSLVRALYYWVAQLLGAVVASLLLRLATDGMRPIGFAVATGVGNLNALLMEIILTFGLVYTVFATAIDHKRGTLGTIAPLAIAFMVGANILVGGPFEGAAMNPARAFGPALVGWRWNNHWVYWLGPFIGAAIAGLIYEFGIIQPEVPVHTHHQPLAPEDY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035552`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035552

Location Chr08:24431552-24432577 (-)

Description Similar to TIP3-1: Aquaporin TIP3-1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g73190`	Water channel required to facilitate the transport of water from the vacuolar compartment to the cytoplasm.	No verified direct reference in this release
`At1g17810`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0492600`	Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035552 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006833 water transport Biological Process

GO:0006914 autophagy Biological Process

GO:0000326 protein storage vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0032586 protein storage vacuole membrane Cellular Component

GO:0042807 central vacuole Cellular Component

GO:0015250 water channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G17810

ath:AT1G73190

dosa:Os10g0492600

zma:541896

zma:541912

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.578

Rank 1 · LXL04_035552 · OH-1004

Lysosome / Vacuole0.217

Rank 2 · LXL04_035552 · OH-1004

Cytoplasm0.146

Rank 3 · LXL04_035552 · OH-1004

Endoplasmic reticulum0.101

Rank 4 · LXL04_035552 · OH-1004

Golgi apparatus0.066

Rank 5 · LXL04_035552 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00230.26MIP14-235 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035552	`PF00230.26`	MIP	14	235	2.8e-77	260.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P26587`	Arabidopsis thaliana	Aquaporin TIP3-1	69.084%	Swiss-Prot	strong database homology
`O22588`	Arabidopsis thaliana	Probable aquaporin TIP3-2	69.732%	Swiss-Prot	strong database homology
`Q9FWV6`	Oryza sativa subsp. japonica	Probable aquaporin TIP3-1	64.231%	Swiss-Prot	strong database homology

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