Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00189
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 665
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00189

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00189 Chr04 34940-17190201 Chr08 37803145-54014168 mixed High 200 anchors
Chr04 34940-17190201 Chr08 37803145-54014168 JCVI_TKOH_00189 · 665 gene pairs TkA04G033930 | LXL04_036609 | 99.5% | RBH_high_identity_coverage_synteny | Strict TkA04G034210 | LXL04_036606 | 97.6% | RBH_high_identity_coverage_synteny | Strict TkA04G034340 | LXL04_036605 | 99.4% | RBH_high_identity_coverage_synteny | Strict TkA04G034490 | LXL04_036604 | 99.7% | multi_source_to_OH1004 | Complex TkA04G034510 | LXL04_036603 | 100.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA04G034540 | LXL04_036602 | 84.3% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA04G034720 | LXL04_036600 | 98.2% | multi_source_to_OH1004 | Complex TkA04G034730 | LXL04_036600 | 87.4% | multi_source_to_OH1004 | Complex TkA04G034780 | LXL04_036599 | 98.7% | non_reciprocal_best_hit | Complex TkA04G034790 | LXL04_036598 | 99.1% | RBH_high_identity_coverage_synteny | Strict TkA04G034850 | LXL04_036596 | 98.5% | RBH_high_identity_coverage_synteny | Strict TkA04G034860 | LXL04_036594 | 98.5% | RBH_below_probable_coverage_or_synteny_threshold | Review
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00189 Chr04:34940-17190201 Chr08:37803145-54014168 mixed 665 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 665 · Showing 401–600 · Page 3/4

TkA04G033930 → LXL04_036609
99.5%
TkA04G034210 → LXL04_036606
97.6%
TkA04G034340 → LXL04_036605
99.4%
TkA04G034490 → LXL04_036604
99.7%
TkA04G034510 → LXL04_036603
100.0%
TkA04G034540 → LXL04_036602
84.3%
TkA04G034720 → LXL04_036600
98.2%
TkA04G034730 → LXL04_036600
87.4%
TkA04G034780 → LXL04_036599
98.7%
TkA04G034790 → LXL04_036598
99.1%
TkA04G034850 → LXL04_036596
98.5%
TkA04G034860 → LXL04_036594
98.5%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA04G033930LXL04_036609JCVI_TKOH_0018999.599.823 / 84.431Strict
TkA04G034210LXL04_036606JCVI_TKOH_0018997.6100.0 / 100.0Strict
TkA04G034340LXL04_036605JCVI_TKOH_0018999.491.86 / 94.611Strict
TkA04G034490LXL04_036604JCVI_TKOH_0018999.7100.0 / 72.304Complex
TkA04G034510LXL04_036603JCVI_TKOH_00189100.061.386 / 35.429Review
TkA04G034540LXL04_036602JCVI_TKOH_0018984.3100.0 / 100.0Review
TkA04G034720LXL04_036600JCVI_TKOH_0018998.286.508 / 62.286Complex
TkA04G034730LXL04_036600JCVI_TKOH_0018987.480.488 / 58.857Complex
TkA04G034780LXL04_036599JCVI_TKOH_0018998.757.664 / 38.164Complex
TkA04G034790LXL04_036598JCVI_TKOH_0018999.1100.0 / 100.0Strict
TkA04G034850LXL04_036596JCVI_TKOH_0018998.5100.0 / 100.0Strict
TkA04G034860LXL04_036594JCVI_TKOH_0018998.566.538 / 64.179Review
TkA04G034880LXL04_036593JCVI_TKOH_0018999.797.872 / 51.33Review
TkA04G035010LXL04_036590JCVI_TKOH_00189100.0100.0 / 40.779Review
TkA04G035150LXL04_036590JCVI_TKOH_0018997.998.947 / 48.831Review
TkA04G035230LXL04_036587JCVI_TKOH_0018985.670.405 / 93.286Complex
TkA04G035290LXL04_036585JCVI_TKOH_0018999.3100.0 / 99.063Strict
TkA04G035340LXL04_036583JCVI_TKOH_0018997.6100.0 / 41.278Review
TkA04G035360LXL04_036582JCVI_TKOH_0018999.5100.0 / 100.0Strict
TkA04G035540LXL04_036580JCVI_TKOH_0018996.180.409 / 75.597Probable
TkA04G035730LXL04_036579JCVI_TKOH_0018985.6100.0 / 100.0Review
TkA04G035990LXL04_036574JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G036730LXL04_036570JCVI_TKOH_0018999.7100.0 / 100.0Strict
TkA04G036880LXL04_036568JCVI_TKOH_0018998.8100.0 / 100.0Strict
TkA04G036890LXL04_036567JCVI_TKOH_0018998.696.694 / 60.274Review
TkA04G036910LXL04_036566JCVI_TKOH_0018998.9100.0 / 76.991Probable
TkA04G036920LXL04_036565JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G036940LXL04_036564JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G036960LXL04_036563JCVI_TKOH_0018991.4100.0 / 100.0Probable
TkA04G036990LXL04_036562JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G037000LXL04_036561JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G037010LXL04_036559JCVI_TKOH_0018998.697.143 / 76.243Probable
TkA04G037140LXL04_036553JCVI_TKOH_0018999.6100.0 / 100.0Review
TkA04G037180LXL04_036554JCVI_TKOH_00189100.0100.0 / 99.057Strict
TkA04G037300LXL04_036556JCVI_TKOH_0018998.994.898 / 76.86Complex
TkA04G037310LXL04_036558JCVI_TKOH_0018996.298.571 / 62.752Complex
TkA04G037480LXL04_036552JCVI_TKOH_0018999.0100.0 / 100.0Strict
TkA04G037510LXL04_036551JCVI_TKOH_0018999.7100.0 / 100.0Strict
TkA04G037560LXL04_036549JCVI_TKOH_0018999.4100.0 / 83.11Strict
TkA04G037840LXL04_036546JCVI_TKOH_00189100.0100.0 / 70.082Complex
TkA04G037980LXL04_036545JCVI_TKOH_0018984.7100.0 / 44.775Complex
TkA04G037990LXL04_036545JCVI_TKOH_0018999.296.61 / 52.561Review
TkA04G038060LXL04_036544JCVI_TKOH_0018997.5100.0 / 100.0Strict
TkA04G038070LXL04_036542JCVI_TKOH_0018998.9100.0 / 100.0Complex
TkA04G038120LXL04_036541JCVI_TKOH_00189100.0100.0 / 26.456Review
TkA04G038130LXL04_036541JCVI_TKOH_0018999.691.228 / 31.553Review
TkA04G038150LXL04_036539JCVI_TKOH_0018992.5100.0 / 100.0Probable
TkA04G038160LXL04_036538JCVI_TKOH_00189100.099.026 / 51.959Review
TkA04G038230LXL04_036536JCVI_TKOH_0018990.7100.0 / 81.25Complex
TkA04G038440LXL04_036531JCVI_TKOH_0018997.3100.0 / 100.0Strict
TkA04G038490LXL04_036529JCVI_TKOH_0018995.6100.0 / 74.04Review
TkA04G038630LXL04_036529JCVI_TKOH_0018993.1100.0 / 74.04Complex
TkA04G038640LXL04_036525JCVI_TKOH_0018993.7100.0 / 50.849Complex
TkA04G038730LXL04_036524JCVI_TKOH_0018996.3100.0 / 97.099Strict
TkA04G038870LXL04_036523JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G038890LXL04_036521JCVI_TKOH_0018998.3100.0 / 80.374Complex
TkA04G038900LXL04_036521JCVI_TKOH_0018975.0100.0 / 80.374Complex
TkA04G038950LXL04_036519JCVI_TKOH_0018998.2100.0 / 100.0Strict
TkA04G039640LXL04_036517JCVI_TKOH_0018999.2100.0 / 96.721Strict
TkA04G039730LXL04_036516JCVI_TKOH_0018998.5100.0 / 92.517Strict
TkA04G039770LXL04_036513JCVI_TKOH_0018999.8100.0 / 100.0Complex
TkA04G039800LXL04_036512JCVI_TKOH_0018999.892.014 / 93.972Strict
TkA04G039820LXL04_036511JCVI_TKOH_0018994.7100.0 / 100.0Complex
TkA04G040160LXL04_036509JCVI_TKOH_0018999.795.667 / 90.252Strict
TkA04G040190LXL04_036508JCVI_TKOH_0018998.7100.0 / 100.0Strict
TkA04G040230LXL04_036506JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G040370LXL04_036504JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G040380LXL04_036503JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G040420LXL04_036502JCVI_TKOH_0018999.2100.0 / 100.0Complex
TkA04G040440LXL04_036501JCVI_TKOH_00189100.097.131 / 97.131Strict
TkA04G041140LXL04_036495JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G041170LXL04_036493JCVI_TKOH_0018999.096.33 / 66.879Complex
TkA04G041210LXL04_036492JCVI_TKOH_0018998.298.817 / 44.385Review
TkA04G041380LXL04_036491JCVI_TKOH_0018999.5100.0 / 100.0Strict
TkA04G041390LXL04_036490JCVI_TKOH_0018999.7100.0 / 100.0Strict
TkA04G041580LXL04_036488JCVI_TKOH_0018983.163.81 / 42.778Complex
TkA04G041610LXL04_036486JCVI_TKOH_0018999.5100.0 / 94.639Strict
TkA04G042260LXL04_036483JCVI_TKOH_0018995.6100.0 / 100.0Complex
TkA04G042630LXL04_036481JCVI_TKOH_0018999.1100.0 / 100.0Strict
TkA04G042660LXL04_036480JCVI_TKOH_0018999.8100.0 / 100.0Strict
TkA04G042670LXL04_036479JCVI_TKOH_0018998.8100.0 / 100.0Strict
TkA04G042680LXL04_036478JCVI_TKOH_0018999.699.253 / 99.129Strict
TkA04G042690LXL04_036477JCVI_TKOH_0018989.5100.0 / 100.0Review
TkA04G043090LXL04_036470JCVI_TKOH_0018999.6100.0 / 100.0Strict
TkA04G043210LXL04_036469JCVI_TKOH_0018992.1100.0 / 100.0Probable
TkA04G043220LXL04_036467JCVI_TKOH_0018999.5100.0 / 100.0Strict
TkA04G043230LXL04_036466JCVI_TKOH_0018999.191.213 / 82.642Complex
TkA04G043500LXL04_036463JCVI_TKOH_0018999.3100.0 / 100.0Strict
TkA04G043600LXL04_036462JCVI_TKOH_0018999.7100.0 / 100.0Strict
TkA04G043610LXL04_036461JCVI_TKOH_0018999.5100.0 / 99.505Review
TkA04G043730LXL04_036459JCVI_TKOH_00189100.0100.0 / 63.985Review
TkA04G043790LXL04_036457JCVI_TKOH_00189100.041.566 / 46.939Complex
TkA04G043840LXL04_036456JCVI_TKOH_0018990.893.54 / 35.711Review
TkA04G043850LXL04_036456JCVI_TKOH_0018997.432.773 / 1.854Complex
TkA04G043870LXL04_036456JCVI_TKOH_00189100.089.683 / 16.12Review
TkA04G043890LXL04_036451JCVI_TKOH_0018976.9100.0 / 100.0Complex
TkA04G043900LXL04_036451JCVI_TKOH_0018993.8100.0 / 100.0Review
TkA04G044090LXL04_036454JCVI_TKOH_0018979.695.804 / 87.261Complex
TkA04G044130LXL04_036454JCVI_TKOH_0018964.472.778 / 84.076Complex
TkA04G044140LXL04_036449JCVI_TKOH_0018999.598.706 / 73.406Probable
TkA04G044410LXL04_036448JCVI_TKOH_0018995.0100.0 / 90.947Complex
TkA04G044540LXL04_036447JCVI_TKOH_00189100.098.893 / 94.7Review
TkA04G044830LXL04_036444JCVI_TKOH_0018999.4100.0 / 100.0Complex
TkA04G045200LXL04_036447JCVI_TKOH_0018996.398.893 / 94.7Review
TkA04G045600LXL04_036444JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G045700LXL04_036443JCVI_TKOH_0018995.3100.0 / 100.0Complex
TkA04G046520LXL04_036439JCVI_TKOH_0018992.668.376 / 11.571Complex
TkA04G046640LXL04_036437JCVI_TKOH_0018997.997.924 / 52.214Review
TkA04G046910LXL04_036435JCVI_TKOH_0018997.099.567 / 41.865Review
TkA04G047290LXL04_036431JCVI_TKOH_0018998.4100.0 / 100.0Complex
TkA04G047350LXL04_036429JCVI_TKOH_00189100.071.975 / 88.281Probable
TkA04G047360LXL04_036428JCVI_TKOH_0018990.0100.0 / 76.531Complex
TkA04G047450LXL04_036427JCVI_TKOH_0018999.699.423 / 67.493Complex
TkA04G047470LXL04_036426JCVI_TKOH_0018990.2100.0 / 64.073Review
TkA04G047570LXL04_036425JCVI_TKOH_0018995.846.154 / 42.478Complex
TkA04G047590LXL04_036424JCVI_TKOH_0018989.7100.0 / 65.854Review
TkA04G048150LXL04_036423JCVI_TKOH_0018994.396.82 / 100.0Probable
TkA04G048160LXL04_036422JCVI_TKOH_00189100.0100.0 / 91.525Strict
TkA04G048240LXL04_036420JCVI_TKOH_00189100.0100.0 / 62.171Review
TkA04G048270LXL04_036419JCVI_TKOH_0018997.697.987 / 72.099Probable
TkA04G048480LXL04_036416JCVI_TKOH_0018994.3100.0 / 51.134Complex
TkA04G048490LXL04_036415JCVI_TKOH_0018973.197.856 / 95.62Complex
TkA04G048590LXL04_036415JCVI_TKOH_0018999.4100.0 / 100.0Complex
TkA04G048740LXL04_036413JCVI_TKOH_0018999.8100.0 / 100.0Strict
TkA04G049230LXL04_036408JCVI_TKOH_00189100.0100.0 / 50.436Review
TkA04G049290LXL04_036407JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G049340LXL04_036406JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G049650LXL04_036405JCVI_TKOH_0018992.282.73 / 96.386Complex
TkA04G049660LXL04_036404JCVI_TKOH_0018998.498.154 / 83.77Strict
TkA04G049900LXL04_036403JCVI_TKOH_0018990.3100.0 / 56.23Complex
TkA04G049920LXL04_036402JCVI_TKOH_0018984.3100.0 / 100.0Review
TkA04G049950LXL04_036401JCVI_TKOH_0018999.3100.0 / 100.0Strict
TkA04G050030LXL04_036400JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G050050LXL04_036399JCVI_TKOH_0018991.0100.0 / 100.0Probable
TkA04G050080LXL04_036398JCVI_TKOH_0018998.459.077 / 26.966Review
TkA04G050090LXL04_036397JCVI_TKOH_0018993.2100.0 / 100.0Probable
TkA04G050260LXL04_036396JCVI_TKOH_0018998.082.5 / 32.039Complex
TkA04G050270LXL04_036395JCVI_TKOH_0018994.1100.0 / 100.0Complex
TkA04G050510LXL04_036392JCVI_TKOH_0018996.778.879 / 32.049Complex
TkA04G050630LXL04_036390JCVI_TKOH_0018997.8100.0 / 100.0Complex
TkA04G050640LXL04_036389JCVI_TKOH_0018999.694.515 / 100.0Complex
TkA04G050680LXL04_036388JCVI_TKOH_0018978.8100.0 / 100.0Review
TkA04G050690LXL04_036387JCVI_TKOH_0018999.8100.0 / 100.0Strict
TkA04G050790LXL04_036386JCVI_TKOH_0018998.9100.0 / 100.0Strict
TkA04G050970LXL04_036384JCVI_TKOH_00189100.0100.0 / 82.121Review
TkA04G051060LXL04_036383JCVI_TKOH_0018999.4100.0 / 100.0Strict
TkA04G051080LXL04_036381JCVI_TKOH_0018991.4100.0 / 96.591Complex
TkA04G051090LXL04_036380JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G051100LXL04_036379JCVI_TKOH_0018998.6100.0 / 100.0Review
TkA04G051110LXL04_036378JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G051120LXL04_036377JCVI_TKOH_0018999.896.825 / 100.0Review
TkA04G051140LXL04_036376JCVI_TKOH_0018993.8100.0 / 100.0Complex
TkA04G051580LXL04_036369JCVI_TKOH_0018999.8100.0 / 100.0Complex
TkA04G051670LXL04_036367JCVI_TKOH_0018999.599.548 / 39.497Review
TkA04G051780LXL04_036362JCVI_TKOH_00189100.0100.0 / 100.0Review
TkA04G051830LXL04_036361JCVI_TKOH_00189100.094.712 / 65.776Complex
TkA04G052550LXL04_036358JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G052560LXL04_036357JCVI_TKOH_00189100.0100.0 / 88.801Strict
TkA04G052570LXL04_036356JCVI_TKOH_0018975.892.732 / 99.282Review
TkA04G052620LXL04_036349JCVI_TKOH_0018997.476.471 / 17.219Complex
TkA04G052670LXL04_036352JCVI_TKOH_00189100.083.562 / 89.051Review
TkA04G052750LXL04_036351JCVI_TKOH_0018991.599.435 / 36.08Complex
TkA04G052770LXL04_036351JCVI_TKOH_00189100.094.619 / 46.993Review
TkA04G052860LXL04_036349JCVI_TKOH_00189100.097.019 / 79.029Complex
TkA04G052880LXL04_036345JCVI_TKOH_0018995.398.276 / 71.173Probable
TkA04G053080LXL04_036343JCVI_TKOH_00189100.084.163 / 51.24Complex
TkA04G053650LXL04_036342JCVI_TKOH_00189100.048.23 / 100.0Review
TkA04G053670LXL04_036340JCVI_TKOH_0018991.698.165 / 98.165Complex
TkA04G053730LXL04_036338JCVI_TKOH_0018997.2100.0 / 100.0Review
TkA04G053880LXL04_036337JCVI_TKOH_0018985.993.103 / 55.785Review
TkA04G053890LXL04_036336JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G054270LXL04_036330JCVI_TKOH_0018992.8100.0 / 82.673Complex
TkA04G054600LXL04_036330JCVI_TKOH_0018993.4100.0 / 82.673Complex
TkA04G054710LXL04_036328JCVI_TKOH_00189100.0100.0 / 74.957Probable
TkA04G054720LXL04_036327JCVI_TKOH_0018995.892.903 / 29.569Review
TkA04G054730LXL04_036327JCVI_TKOH_00189100.0100.0 / 35.524Review
TkA04G054780LXL04_036326JCVI_TKOH_0018999.273.143 / 63.054Review
TkA04G054810LXL04_036327JCVI_TKOH_0018974.6100.0 / 97.947Complex
TkA04G054830LXL04_036325JCVI_TKOH_0018978.857.895 / 13.333Complex
TkA04G054850LXL04_036325JCVI_TKOH_0018999.271.019 / 100.0Complex
TkA04G055070LXL04_036322JCVI_TKOH_0018983.0100.0 / 100.0Review
TkA04G055110LXL04_036321JCVI_TKOH_0018981.5100.0 / 100.0Review
TkA04G055130LXL04_036320JCVI_TKOH_00189100.053.304 / 100.0Review
TkA04G056520LXL04_036315JCVI_TKOH_00189100.070.048 / 43.939Complex
TkA04G056890LXL04_036311JCVI_TKOH_0018999.298.148 / 52.268Review
TkA04G056910LXL04_036309JCVI_TKOH_0018989.992.48 / 57.741Complex
TkA04G056920LXL04_036310JCVI_TKOH_0018998.594.821 / 49.128Review
TkA04G056930LXL04_036310JCVI_TKOH_0018996.395.768 / 43.897Review
TkA04G056960LXL04_036310JCVI_TKOH_0018982.897.234 / 50.974Complex
TkA04G056980LXL04_036306JCVI_TKOH_0018998.8100.0 / 100.0Complex
TkA04G057080LXL04_036301JCVI_TKOH_0018992.5100.0 / 94.424Probable
TkA04G057090LXL04_036300JCVI_TKOH_00189100.0100.0 / 100.0Complex
TkA04G057670LXL04_036295JCVI_TKOH_0018999.7100.0 / 100.0Strict
TkA04G057720LXL04_036293JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G057750LXL04_036292JCVI_TKOH_00189100.0100.0 / 100.0Strict
TkA04G057960LXL04_036289JCVI_TKOH_0018992.5100.0 / 100.0Probable
TkA04G058290LXL04_036287JCVI_TKOH_00189100.098.398 / 59.684Review
TkA04G058300LXL04_036286JCVI_TKOH_0018999.3100.0 / 100.0Complex
TkA04G058310LXL04_036284JCVI_TKOH_0018983.192.486 / 19.822Review
TkA04G058430LXL04_036282JCVI_TKOH_0018995.696.691 / 96.491Strict