Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00350
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 587
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00350

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00350 Chr08 47179108-67021829 Chr07 23822747-42607422 mixed High 187 anchors
Chr08 47179108-67021829 Chr07 23822747-42607422 JCVI_TKOH_00350 · 587 gene pairs TkA08G232810 | LXL04_033119 | 45.5% | non_reciprocal_best_hit | Complex TkA08G232820 | LXL04_033124 | 88.4% | multi_source_to_OH1004 | Complex TkA08G232880 | LXL04_033122 | 99.6% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA08G232910 | LXL04_033119 | 72.6% | multi_source_to_OH1004 | Complex TkA08G233080 | LXL04_033119 | 78.1% | multi_source_to_OH1004 | Complex TkA08G233440 | LXL04_033124 | 98.8% | multi_source_to_OH1004 | Complex TkA08G233450 | LXL04_033125 | 100.0% | multi_source_to_OH1004 | Complex TkA08G233510 | LXL04_033126 | 98.8% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA08G233670 | LXL04_033129 | 58.9% | non_reciprocal_best_hit | Complex TkA08G233700 | LXL04_033130 | 99.9% | RBH_high_identity_coverage_synteny | Strict TkA08G233800 | LXL04_033131 | 98.1% | RBH_high_identity_coverage_synteny | Strict TkA08G233810 | LXL04_033132 | 100.0% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00350 Chr08:47179108-67021829 Chr07:23822747-42607422 mixed 587 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 587 · Showing 401–587 · Page 3/3

TkA08G232810 → LXL04_033119
45.5%
TkA08G232820 → LXL04_033124
88.4%
TkA08G232880 → LXL04_033122
99.6%
TkA08G232910 → LXL04_033119
72.6%
TkA08G233080 → LXL04_033119
78.1%
TkA08G233440 → LXL04_033124
98.8%
TkA08G233450 → LXL04_033125
100.0%
TkA08G233510 → LXL04_033126
98.8%
TkA08G233670 → LXL04_033129
58.9%
TkA08G233700 → LXL04_033130
99.9%
TkA08G233800 → LXL04_033131
98.1%
TkA08G233810 → LXL04_033132
100.0%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA08G232810LXL04_033119JCVI_TKOH_0035045.5100.0 / 84.296Complex
TkA08G232820LXL04_033124JCVI_TKOH_0035088.493.939 / 20.261Complex
TkA08G232880LXL04_033122JCVI_TKOH_0035099.6100.0 / 100.0Review
TkA08G232910LXL04_033119JCVI_TKOH_0035072.6100.0 / 50.879Complex
TkA08G233080LXL04_033119JCVI_TKOH_0035078.1100.0 / 32.161Complex
TkA08G233440LXL04_033124JCVI_TKOH_0035098.8100.0 / 100.0Complex
TkA08G233450LXL04_033125JCVI_TKOH_00350100.098.944 / 92.394Complex
TkA08G233510LXL04_033126JCVI_TKOH_0035098.89.346 / 8.081Review
TkA08G233670LXL04_033129JCVI_TKOH_0035058.997.286 / 83.923Complex
TkA08G233700LXL04_033130JCVI_TKOH_0035099.9100.0 / 99.427Strict
TkA08G233800LXL04_033131JCVI_TKOH_0035098.1100.0 / 100.0Strict
TkA08G233810LXL04_033132JCVI_TKOH_00350100.0100.0 / 100.0Complex
TkA08G233830LXL04_033133JCVI_TKOH_0035099.8100.0 / 100.0Complex
TkA08G233860LXL04_033135JCVI_TKOH_0035061.385.333 / 72.812Complex
TkA08G234100LXL04_033136JCVI_TKOH_0035098.1100.0 / 96.687Strict
TkA08G234110LXL04_033137JCVI_TKOH_0035082.391.667 / 19.34Complex
TkA08G234130LXL04_033137JCVI_TKOH_0035075.8100.0 / 21.816Complex
TkA08G234140LXL04_033138JCVI_TKOH_00350100.0100.0 / 88.426Strict
TkA08G234150LXL04_033139JCVI_TKOH_0035099.7100.0 / 100.0Complex
TkA08G234630LXL04_033140JCVI_TKOH_0035079.693.798 / 56.757Review
TkA08G234800LXL04_033141JCVI_TKOH_00350100.094.118 / 64.865Review
TkA08G234810LXL04_033142JCVI_TKOH_0035096.999.435 / 54.743Review
TkA08G234850LXL04_033144JCVI_TKOH_00350100.051.842 / 100.0Review
TkA08G234880LXL04_033146JCVI_TKOH_0035098.995.767 / 56.918Review
TkA08G234890LXL04_033146JCVI_TKOH_0035097.1100.0 / 43.396Review
TkA08G234940LXL04_033147JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G235020LXL04_033148JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G235110LXL04_033149JCVI_TKOH_0035099.5100.0 / 100.0Complex
TkA08G235250LXL04_033150JCVI_TKOH_0035099.797.947 / 90.515Complex
TkA08G235560LXL04_033155JCVI_TKOH_0035065.899.048 / 51.385Complex
TkA08G235570LXL04_033151JCVI_TKOH_0035075.986.936 / 99.167Complex
TkA08G235710LXL04_033155JCVI_TKOH_0035098.594.224 / 65.491Complex
TkA08G235860LXL04_033156JCVI_TKOH_0035099.799.64 / 91.563Complex
TkA08G235870LXL04_033157JCVI_TKOH_00350100.0100.0 / 98.249Review
TkA08G235960LXL04_033159JCVI_TKOH_00350100.099.623 / 98.876Strict
TkA08G235990LXL04_033160JCVI_TKOH_0035097.5100.0 / 100.0Strict
TkA08G236400LXL04_033163JCVI_TKOH_00350100.0100.0 / 77.778Probable
TkA08G236430LXL04_033164JCVI_TKOH_0035096.994.175 / 45.972Review
TkA08G236810LXL04_033167JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G237210LXL04_033171JCVI_TKOH_0035084.0100.0 / 100.0Complex
TkA08G237270LXL04_033172JCVI_TKOH_0035081.5100.0 / 100.0Complex
TkA08G237310LXL04_033174JCVI_TKOH_00350100.091.892 / 40.316Review
TkA08G237360LXL04_033175JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G237520LXL04_033177JCVI_TKOH_0035099.8100.0 / 82.495Strict
TkA08G239400LXL04_033178JCVI_TKOH_0035099.4100.0 / 71.429Probable
TkA08G239450LXL04_033180JCVI_TKOH_0035096.892.375 / 92.128Strict
TkA08G239680LXL04_033181JCVI_TKOH_0035097.1100.0 / 100.0Strict
TkA08G239690LXL04_033182JCVI_TKOH_0035096.798.757 / 68.318Review
TkA08G239750LXL04_033185JCVI_TKOH_0035099.698.312 / 99.573Strict
TkA08G239760LXL04_033186JCVI_TKOH_0035099.2100.0 / 100.0Complex
TkA08G239780LXL04_033187JCVI_TKOH_0035098.5100.0 / 100.0Strict
TkA08G239970LXL04_033189JCVI_TKOH_0035097.057.439 / 47.839Review
TkA08G240000LXL04_033193JCVI_TKOH_0035098.4100.0 / 100.0Complex
TkA08G240040LXL04_033194JCVI_TKOH_0035099.3100.0 / 53.867Review
TkA08G240370LXL04_033197JCVI_TKOH_0035099.1100.0 / 100.0Strict
TkA08G240550LXL04_033198JCVI_TKOH_0035088.9100.0 / 100.0Review
TkA08G240590LXL04_033199JCVI_TKOH_0035097.599.901 / 99.114Strict
TkA08G240630LXL04_033200JCVI_TKOH_0035088.0100.0 / 100.0Review
TkA08G240640LXL04_033201JCVI_TKOH_0035097.6100.0 / 100.0Complex
TkA08G240650LXL04_033202JCVI_TKOH_0035098.5100.0 / 100.0Strict
TkA08G240660LXL04_033203JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G240920LXL04_033205JCVI_TKOH_0035085.273.958 / 82.432Complex
TkA08G240970LXL04_033206JCVI_TKOH_0035098.8100.0 / 100.0Strict
TkA08G241000LXL04_033208JCVI_TKOH_0035095.6100.0 / 25.15Review
TkA08G241010LXL04_033208JCVI_TKOH_00350100.047.217 / 24.649Complex
TkA08G241020LXL04_033209JCVI_TKOH_0035094.241.317 / 53.906Complex
TkA08G241040LXL04_033212JCVI_TKOH_00350100.0100.0 / 100.0Complex
TkA08G241750LXL04_033218JCVI_TKOH_0035089.085.616 / 77.714Complex
TkA08G242080LXL04_033219JCVI_TKOH_0035099.2100.0 / 74.525Probable
TkA08G242090LXL04_033220JCVI_TKOH_0035098.4100.0 / 97.751Strict
TkA08G242160LXL04_033221JCVI_TKOH_0035095.596.458 / 93.347Strict
TkA08G242170LXL04_033222JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G242330LXL04_033223JCVI_TKOH_00350100.0100.0 / 93.189Complex
TkA08G242340LXL04_033224JCVI_TKOH_0035098.3100.0 / 100.0Strict
TkA08G242890LXL04_033229JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G242910LXL04_033230JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G242920LXL04_033231JCVI_TKOH_0035097.0100.0 / 100.0Strict
TkA08G243000LXL04_033232JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G243040LXL04_033234JCVI_TKOH_0035098.8100.0 / 100.0Strict
TkA08G243090LXL04_033237JCVI_TKOH_0035082.2100.0 / 100.0Review
TkA08G243200LXL04_033239JCVI_TKOH_0035098.497.95 / 99.768Strict
TkA08G243220LXL04_033240JCVI_TKOH_0035097.6100.0 / 100.0Strict
TkA08G243360LXL04_033242JCVI_TKOH_0035099.5100.0 / 100.0Complex
TkA08G243550LXL04_033243JCVI_TKOH_0035098.6100.0 / 100.0Strict
TkA08G243670LXL04_033245JCVI_TKOH_0035097.3100.0 / 27.447Review
TkA08G243680LXL04_033245JCVI_TKOH_0035094.2100.0 / 38.975Review
TkA08G243700LXL04_033247JCVI_TKOH_0035099.899.794 / 78.827Review
TkA08G244080LXL04_033251JCVI_TKOH_0035094.3100.0 / 52.395Review
TkA08G244120LXL04_033252JCVI_TKOH_0035093.8100.0 / 100.0Probable
TkA08G244280LXL04_033253JCVI_TKOH_0035095.7100.0 / 42.036Review
TkA08G244290LXL04_033253JCVI_TKOH_0035096.897.964 / 43.448Review
TkA08G244310LXL04_033255JCVI_TKOH_0035097.481.667 / 44.144Review
TkA08G244430LXL04_033256JCVI_TKOH_0035099.5100.0 / 100.0Strict
TkA08G244520LXL04_033257JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G244540LXL04_033281JCVI_TKOH_0035083.6100.0 / 100.0Complex
TkA08G244660LXL04_033280JCVI_TKOH_0035098.8100.0 / 100.0Complex
TkA08G244710LXL04_033279JCVI_TKOH_0035080.185.461 / 34.271Complex
TkA08G245250LXL04_033280JCVI_TKOH_0035087.180.87 / 56.707Complex
TkA08G245380LXL04_033273JCVI_TKOH_0035089.067.26 / 99.479Complex
TkA08G245430LXL04_033265JCVI_TKOH_0035081.9100.0 / 100.0Complex
TkA08G245510LXL04_033263JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G245890LXL04_033264JCVI_TKOH_0035099.493.067 / 65.356Review
TkA08G245900LXL04_033265JCVI_TKOH_00350100.0100.0 / 100.0Complex
TkA08G245970LXL04_033267JCVI_TKOH_00350100.0100.0 / 100.0Complex
TkA08G246080LXL04_033267JCVI_TKOH_00350100.0100.0 / 100.0Complex
TkA08G246410LXL04_033265JCVI_TKOH_0035082.8100.0 / 100.0Complex
TkA08G246710LXL04_033273JCVI_TKOH_0035099.483.333 / 83.333Complex
TkA08G246720LXL04_033274JCVI_TKOH_0035099.094.719 / 60.168Complex
TkA08G246910LXL04_033262JCVI_TKOH_0035099.4100.0 / 80.726Strict
TkA08G246920LXL04_033261JCVI_TKOH_00350100.0100.0 / 100.0Complex
TkA08G247280LXL04_033260JCVI_TKOH_00350100.066.883 / 66.026Review
TkA08G247420LXL04_033258JCVI_TKOH_0035094.352.507 / 53.964Review
TkA08G247550LXL04_033273JCVI_TKOH_0035099.172.956 / 60.417Complex
TkA08G247560LXL04_033274JCVI_TKOH_0035094.199.16 / 24.738Complex
TkA08G247730LXL04_033275JCVI_TKOH_0035087.5100.0 / 36.175Review
TkA08G247750LXL04_033275JCVI_TKOH_00350100.094.118 / 11.693Review
TkA08G247900LXL04_033281JCVI_TKOH_0035076.0100.0 / 92.593Complex
TkA08G248450LXL04_033280JCVI_TKOH_0035098.8100.0 / 100.0Complex
TkA08G248490LXL04_033281JCVI_TKOH_0035083.6100.0 / 100.0Complex
TkA08G248610LXL04_033282JCVI_TKOH_0035098.7100.0 / 100.0Strict
TkA08G248620LXL04_033283JCVI_TKOH_0035093.6100.0 / 72.924Probable
TkA08G248740LXL04_033287JCVI_TKOH_0035068.6100.0 / 100.0Review
TkA08G248950LXL04_033288JCVI_TKOH_00350100.0100.0 / 100.0Review
TkA08G248960LXL04_033289JCVI_TKOH_0035099.0100.0 / 100.0Strict
TkA08G249090LXL04_033292JCVI_TKOH_0035099.4100.0 / 100.0Complex
TkA08G249110LXL04_033293JCVI_TKOH_0035096.399.617 / 98.349Strict
TkA08G249120LXL04_033294JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G249130LXL04_033295JCVI_TKOH_0035095.9100.0 / 100.0Strict
TkA08G249140LXL04_033296JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G249190LXL04_033297JCVI_TKOH_0035098.6100.0 / 100.0Complex
TkA08G249200LXL04_033298JCVI_TKOH_0035098.496.403 / 100.0Strict
TkA08G249220LXL04_033299JCVI_TKOH_0035098.898.788 / 74.827Probable
TkA08G249330LXL04_033301JCVI_TKOH_00350100.0100.0 / 100.0Complex
TkA08G249350LXL04_033302JCVI_TKOH_0035097.695.395 / 76.984Probable
TkA08G249420LXL04_033304JCVI_TKOH_0035090.3100.0 / 100.0Probable
TkA08G249510LXL04_033305JCVI_TKOH_0035099.087.853 / 44.46Review
TkA08G249560LXL04_033307JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G249570LXL04_033308JCVI_TKOH_0035098.999.813 / 98.706Strict
TkA08G250000LXL04_033309JCVI_TKOH_00350100.0100.0 / 100.0Complex
TkA08G250190LXL04_033310JCVI_TKOH_0035096.8100.0 / 100.0Strict
TkA08G250200LXL04_033311JCVI_TKOH_0035099.699.229 / 91.759Strict
TkA08G250260LXL04_033312JCVI_TKOH_0035099.3100.0 / 100.0Strict
TkA08G250300LXL04_033313JCVI_TKOH_0035098.097.087 / 100.0Strict
TkA08G250360LXL04_033315JCVI_TKOH_0035099.4100.0 / 100.0Strict
TkA08G250460LXL04_033318JCVI_TKOH_00350100.099.13 / 97.021Strict
TkA08G250570LXL04_033319JCVI_TKOH_0035060.799.254 / 86.538Complex
TkA08G250590LXL04_033319JCVI_TKOH_00350100.0100.0 / 89.744Complex
TkA08G250620LXL04_033320JCVI_TKOH_00350100.0100.0 / 100.0Review
TkA08G250650LXL04_033322JCVI_TKOH_00350100.097.087 / 79.365Complex
TkA08G250670LXL04_033323JCVI_TKOH_00350100.088.462 / 34.761Review
TkA08G250690LXL04_033324JCVI_TKOH_0035095.876.411 / 43.419Complex
TkA08G250720LXL04_033325JCVI_TKOH_0035099.8100.0 / 87.889Strict
TkA08G250800LXL04_033327JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G250830LXL04_033328JCVI_TKOH_0035098.388.201 / 54.662Review
TkA08G251070LXL04_033330JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G251080LXL04_033331JCVI_TKOH_0035098.2100.0 / 100.0Strict
TkA08G251240LXL04_033334JCVI_TKOH_0035099.1100.0 / 100.0Complex
TkA08G251250LXL04_033335JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G251570LXL04_033337JCVI_TKOH_0035099.3100.0 / 100.0Strict
TkA08G251590LXL04_033338JCVI_TKOH_0035099.0100.0 / 100.0Strict
TkA08G251720LXL04_033339JCVI_TKOH_0035099.5100.0 / 100.0Strict
TkA08G251830LXL04_033340JCVI_TKOH_0035099.195.833 / 66.092Complex
TkA08G251940LXL04_033341JCVI_TKOH_00350100.084.516 / 78.443Probable
TkA08G252500LXL04_033343JCVI_TKOH_0035095.069.655 / 55.495Review
TkA08G252520LXL04_033345JCVI_TKOH_00350100.0100.0 / 43.027Review
TkA08G253000LXL04_033348JCVI_TKOH_00350100.095.767 / 96.277Strict
TkA08G253090LXL04_033350JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G253110LXL04_033351JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G253430LXL04_033352JCVI_TKOH_0035096.7100.0 / 100.0Strict
TkA08G253570LXL04_033358JCVI_TKOH_0035099.8100.0 / 91.868Complex
TkA08G253750LXL04_033359JCVI_TKOH_00350100.0100.0 / 100.0Strict
TkA08G253820LXL04_033360JCVI_TKOH_0035095.599.7 / 89.96Strict
TkA08G253840LXL04_033361JCVI_TKOH_0035093.345.625 / 83.333Review
TkA08G253850LXL04_033362JCVI_TKOH_0035090.1100.0 / 100.0Probable
TkA08G253890LXL04_033363JCVI_TKOH_0035097.1100.0 / 100.0Strict
TkA08G253900LXL04_033364JCVI_TKOH_0035099.3100.0 / 100.0Strict
TkA08G253910LXL04_033366JCVI_TKOH_0035098.8100.0 / 100.0Strict
TkA08G254020LXL04_033367JCVI_TKOH_0035086.0100.0 / 100.0Review
TkA08G254120LXL04_033370JCVI_TKOH_00350100.0100.0 / 58.551Review
TkA08G254670LXL04_033371JCVI_TKOH_0035098.0100.0 / 84.746Strict
TkA08G254850LXL04_033374JCVI_TKOH_00350100.0100.0 / 100.0Complex
TkA08G255060LXL04_033374JCVI_TKOH_00350100.0100.0 / 100.0Complex
TkA08G255800LXL04_033378JCVI_TKOH_0035091.3100.0 / 100.0Probable
TkA08G255850LXL04_033380JCVI_TKOH_0035098.3100.0 / 100.0Complex
TkA08G256320LXL04_033383JCVI_TKOH_0035099.596.963 / 100.0Strict
TkA08G256750LXL04_033387JCVI_TKOH_0035096.8100.0 / 100.0Strict
TkA08G257010LXL04_033388JCVI_TKOH_00350100.0100.0 / 100.0Review