LXL04_033287 | RubberDandelionOmics

Gene overview

LXL04_033287

Reference: OH-1004 Chr: Chr07 Coordinates: 40338934-40342980 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1005 bp · LXL04_033287|LXL04_033287|OH1004|cDNA

ATGAAAGCACCTCCCATCCCCCCGTCCCACCACCTCTATACCTTTACCTTTACCAGCACACACACAAGTGTGTCTCTAGTTATCTCGCTTTACCCCCCAAAACGCTCTGTCCAAATGGAGATGACGTTCCAGGCTCAGGCGGCCGTTGCGGTGGTGCTGGTTGTTCTATACGGCCGGATCACGGCGGCGACGTGGTGTGTCGTCAGAAGCGAAGCCTCAAGGGAGGCATTGCAGGCGGCACTGGACTACGCCTGTGCTGC...

CDS

Download CDS FASTA

1005 bp · LXL04_033287|LXL04_033287|OH1004|CDS

ATGAAAGCACCTCCCATCCCCCCGTCCCACCACCTCTATACCTTTACCTTTACCAGCACACACACAAGTGTGTCTCTAGTTATCTCGCTTTACCCCCCAAAACGCTCTGTCCAAATGGAGATGACGTTCCAGGCTCAGGCGGCCGTTGCGGTGGTGCTGGTTGTTCTATACGGCCGGATCACGGCGGCGACGTGGTGTGTCGTCAGAAGCGAAGCCTCAAGGGAGGCATTGCAGGCGGCACTGGACTACGCCTGTGCTGC...

Protein

Download Protein FASTA

334 aa · LXL04_033287|LXL04_033287|OH1004|PROTEIN

MKAPPIPPSHHLYTFTFTSTHTSVSLVISLYPPKRSVQMEMTFQAQAAVAVVLVVLYGRITAATWCVVRSEASREALQAALDYACAAGADCAPIQQNGLCFLPNTIQAHASYAFNSYYMRRSMAAGSCEFGGTATIAKTDPSYGSCVYPASPSTDANGAGIPRYPWGPDPNGAGITRFNGTHYINGYPTGSPYPSGISLPEPDGYLAGQGRGWVWSWRSGTGMGIAVPDTTRPRLHPYLEECLPICLRLDRSITFDGITA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033287`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033287

Location Chr07:40338934-40342980 (+)

Description Similar to PDCB3: PLASMODESMATA CALLOSE-BINDING PROTEIN 3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g18650`	PLASMODESMATA CALLOSE-BINDING PROTEIN 3.	No verified direct reference in this release
`At2g01630`	Glucan endo-1,3-beta-glucosidase 3.	No verified direct reference in this release
`At4g34480`	Glucan endo-1,3-beta-glucosidase 7.	No verified direct reference in this release
`At5g61130`	Able to bind (1->3)-beta-D-glucans (laminarin).	An Arabidopsis GPI-anchor plasmodesmal neck protein with callose binding activity and potential to regulate cell-to-cell trafficking.2009 · DOI: 10.1105/tpc.108.060145

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033287 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0006952 defense response Biological Process

GO:0052543 callose deposition in cell wall Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G18650

ath:AT2G01630

ath:AT4G34480

ath:AT5G61130

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.487

Rank 1 · LXL04_033287 · OH-1004

Endoplasmic reticulum0.176

Rank 2 · LXL04_033287 · OH-1004

Extracellular0.169

Rank 3 · LXL04_033287 · OH-1004

Cytoplasm0.114

Rank 4 · LXL04_033287 · OH-1004

Nucleus0.112

Rank 5 · LXL04_033287 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07983.19X864-135 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033287	`PF07983.19`	X8	64	135	7.8e-22	78.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ86`	Arabidopsis thaliana	PLASMODESMATA CALLOSE-BINDING PROTEIN 3	48.148%	Swiss-Prot	weak database homology
`Q9ZU91`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 3	43.137%	Swiss-Prot	weak database homology
`Q9M069`	Arabidopsis thaliana	Glucan endo-1,3-beta-glucosidase 7	45.652%	Swiss-Prot	weak database homology
`Q9FNQ2`	Arabidopsis thaliana	PLASMODESMATA CALLOSE-BINDING PROTEIN 1	44.944%	Swiss-Prot	weak database homology

JBrowse

View in Genome Browser

Gene Card