LXL04_033156 | RubberDandelionOmics

Gene overview

LXL04_033156

Reference: OH-1004 Chr: Chr07 Coordinates: 37310939-37317086 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3630 bp · LXL04_033156|LXL04_033156|OH1004|cDNA

atggggagattgttagaGTCAGCCCAAAAGACAAATTACTTTCTTGGGCCAAGAACCCATGTCCTTTTTGCTTACGTCATCCCACATTTTCCCTCTGATATTCGATTTTCCTTTTTTTGCCACTCATGTTTCTGCTATATCTGTCTCTTTGCCCTAATAACTCCTCCGCCCCCATTCCAATCATCATTGTCAGTTGAAATCAACACACAAACTGCTTGTGTTCTCGCCTATAAACAACAGGAGACACCTCCGCCGTTCGC...

CDS

Download CDS FASTA

3630 bp · LXL04_033156|LXL04_033156|OH1004|CDS

ATGGGGAGATTGTTAGAGTCAGCCCAAAAGACAAATTACTTTCTTGGGCCAAGAACCCATGTCCTTTTTGCTTACGTCATCCCACATTTTCCCTCTGATATTCGATTTTCCTTTTTTTGCCACTCATGTTTCTGCTATATCTGTCTCTTTGCCCTAATAACTCCTCCGCCCCCATTCCAATCATCATTGTCAGTTGAAATCAACACACAAACTGCTTGTGTTCTCGCCTATAAACAACAGGAGACACCTCCGCCGTTCGC...

Protein

Download Protein FASTA

1209 aa · LXL04_033156|LXL04_033156|OH1004|PROTEIN

MGRLLESAQKTNYFLGPRTHVLFAYVIPHFPSDIRFSFFCHSCFCYICLFALITPPPPFQSSLSVEINTQTACVLAYKQQETPPPFAVGNHQRIRCLSVVLIVQQAQLAAILGADPAPFEALISHLMSSSNEQRSQAELIFNLCKQTDPNTLVLKLAQLLQLSPHMEARAMSAILLRKQLTQDDSVLWNVLSPATQSSLKSILLTCVQREEAKTIMKKLCDTISELGASILPENGWPELLPFMFQCVSSDSPKLQESAFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033156`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_033156`
Location	Chr07:37310939-37317086 (+)
Description	Similar to IPO5: Importin-5
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_033156` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0002753 cytoplasmic pattern recognition receptor signaling pathway Biological Process GO:0006606 protein import into nucleus Biological Process GO:0006607 NLS-bearing protein import into nucleus Biological Process GO:0006610 ribosomal protein import into nucleus Biological Process GO:0042307 positive regulation of protein import into nucleus Biological Process GO:0045786 negative regulation of cell cycle Biological Process GO:0071230 cellular response to amino acid stimulus Biological Process GO:0005634 nucleus Cellular Component GO:0005635 nuclear envelope Cellular Component GO:0005643 nuclear pore Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component
KEGG gene cross-reference	hsa:26953 hsa:3843 mmu:240614 mmu:70572 spo:2539387 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.651

Rank 1 · LXL04_033156 · OH-1004

Cytoplasm0.538

Rank 2 · LXL04_033156 · OH-1004

Cell membrane0.057

Rank 3 · LXL04_033156 · OH-1004

Endoplasmic reticulum0.050

Rank 4 · LXL04_033156 · OH-1004

Mitochondrion0.047

Rank 5 · LXL04_033156 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25780.2TPR_IPO5213-369 aa

PF18808.8Importin_rep_4380-471 aa

PF23271.2HEAT_GCN1479-644 aa

PF13646.13HEAT_2481-579 aa

PF25780.2TPR_IPO5482-600 aa

PF13513.13HEAT_EZ487-540 aa

PF12755.14Vac14_Fab1_bd488-536 aa

PF24714.2TOR1L1_N493-674 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033156	`PF25780.2`	TPR_IPO5	213	369	4.8e-50	170.7
LXL04_033156	`PF18808.8`	Importin_rep_4	380	471	2e-25	89.7
LXL04_033156	`PF23271.2`	HEAT_GCN1	479	644	1.9e-20	74.5
LXL04_033156	`PF13646.13`	HEAT_2	481	579	1.2e-15	58.2
LXL04_033156	`PF25780.2`	TPR_IPO5	482	600	4.8e-50	170.7
LXL04_033156	`PF13513.13`	HEAT_EZ	487	540	1.1e-33	115.7
LXL04_033156	`PF12755.14`	Vac14_Fab1_bd	488	536	2.6e-10	41.5
LXL04_033156	`PF24714.2`	TOR1L1_N	493	674	6.7e-16	59.2
LXL04_033156	`PF12717.14`	Cnd1	509	645	4.3e-08	34.1
LXL04_033156	`PF13513.13`	HEAT_EZ	570	624	1.1e-33	115.7
LXL04_033156	`PF05004.20`	IFRD	583	719	4.2e-10	39.8
LXL04_033156	`PF25574.2`	TPR_IMB1	592	741	6.7e-22	78.4
LXL04_033156	`PF18829.8`	Importin_rep_6	879	981	2.2e-23	83.4
LXL04_033156	`PF25574.2`	TPR_IMB1	882	1031	6.7e-22	78.4
LXL04_033156	`PF02985.29`	HEAT	1019	1047	1.7e-19	68.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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