Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00314
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 376
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00314

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00314 Chr07 101257191-112970028 Chr06 115965610-126693932 mixed High 176 anchors
Chr07 101257191-112970028 Chr06 115965610-126693932 JCVI_TKOH_00314 · 376 gene pairs TkA07G427270 | LXL04_030740 | 97.7% | multi_source_to_OH1004 | Complex TkA07G427280 | LXL04_030741 | 99.8% | RBH_sequence_supported | Probable TkA07G427720 | LXL04_030740 | 98.8% | sequence_supported_annotation_or_model_conflict | Review TkA07G428300 | LXL04_030742 | 99.5% | RBH_high_identity_coverage_synteny | Strict TkA07G428340 | LXL04_030745 | 99.3% | RBH_high_identity_coverage_synteny | Strict TkA07G428360 | LXL04_030746 | 75.7% | multi_source_to_OH1004 | Complex TkA07G428380 | LXL04_030747 | 98.3% | RBH_high_identity_coverage_synteny | Strict TkA07G428420 | LXL04_030748 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA07G428600 | LXL04_030750 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA07G428840 | LXL04_030754 | 81.0% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA07G428890 | LXL04_030755 | 96.3% | RBH_high_identity_coverage_synteny | Strict TkA07G428950 | LXL04_030756 | 73.8% | RBH_below_probable_coverage_or_synteny_threshold | Review
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00314 Chr07:101257191-112970028 Chr06:115965610-126693932 mixed 376 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 376 · Showing 201–376 · Page 2/2

TkA07G427270 → LXL04_030740
97.7%
TkA07G427280 → LXL04_030741
99.8%
TkA07G427720 → LXL04_030740
98.8%
TkA07G428300 → LXL04_030742
99.5%
TkA07G428340 → LXL04_030745
99.3%
TkA07G428360 → LXL04_030746
75.7%
TkA07G428380 → LXL04_030747
98.3%
TkA07G428420 → LXL04_030748
100.0%
TkA07G428600 → LXL04_030750
100.0%
TkA07G428840 → LXL04_030754
81.0%
TkA07G428890 → LXL04_030755
96.3%
TkA07G428950 → LXL04_030756
73.8%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA07G427270LXL04_030740JCVI_TKOH_0031497.799.582 / 67.518Complex
TkA07G427280LXL04_030741JCVI_TKOH_0031499.8100.0 / 71.065Probable
TkA07G427720LXL04_030740JCVI_TKOH_0031498.899.059 / 59.716Review
TkA07G428300LXL04_030742JCVI_TKOH_0031499.5100.0 / 100.0Strict
TkA07G428340LXL04_030745JCVI_TKOH_0031499.3100.0 / 100.0Strict
TkA07G428360LXL04_030746JCVI_TKOH_0031475.7100.0 / 100.0Complex
TkA07G428380LXL04_030747JCVI_TKOH_0031498.3100.0 / 100.0Strict
TkA07G428420LXL04_030748JCVI_TKOH_00314100.0100.0 / 90.941Review
TkA07G428600LXL04_030750JCVI_TKOH_00314100.0100.0 / 90.695Strict
TkA07G428840LXL04_030754JCVI_TKOH_0031481.084.98 / 60.644Review
TkA07G428890LXL04_030755JCVI_TKOH_0031496.3100.0 / 100.0Strict
TkA07G428950LXL04_030756JCVI_TKOH_0031473.860.263 / 73.377Review
TkA07G429000LXL04_030757JCVI_TKOH_0031497.8100.0 / 100.0Strict
TkA07G429010LXL04_030758JCVI_TKOH_0031499.4100.0 / 100.0Strict
TkA07G429020LXL04_030759JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G429040LXL04_030760JCVI_TKOH_0031465.431.644 / 40.544Complex
TkA07G429130LXL04_030760JCVI_TKOH_0031490.7100.0 / 100.0Probable
TkA07G429220LXL04_030761JCVI_TKOH_00314100.0100.0 / 100.0Complex
TkA07G429560LXL04_030763JCVI_TKOH_0031499.9100.0 / 96.819Strict
TkA07G429570LXL04_030764JCVI_TKOH_0031499.1100.0 / 100.0Strict
TkA07G429580LXL04_030765JCVI_TKOH_0031498.2100.0 / 100.0Strict
TkA07G429590LXL04_030766JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G429600LXL04_030767JCVI_TKOH_00314100.0100.0 / 88.86Strict
TkA07G429610LXL04_030768JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G429630LXL04_030769JCVI_TKOH_0031498.7100.0 / 100.0Strict
TkA07G429650LXL04_030770JCVI_TKOH_00314100.096.757 / 41.531Review
TkA07G429670LXL04_030771JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G429690LXL04_030772JCVI_TKOH_0031499.7100.0 / 100.0Strict
TkA07G429760LXL04_030774JCVI_TKOH_0031495.8100.0 / 91.935Review
TkA07G430290LXL04_030779JCVI_TKOH_0031497.8100.0 / 100.0Strict
TkA07G430390LXL04_030782JCVI_TKOH_00314100.097.122 / 35.62Review
TkA07G430620LXL04_030785JCVI_TKOH_0031486.799.785 / 68.038Review
TkA07G431590LXL04_030790JCVI_TKOH_0031461.898.406 / 95.165Review
TkA07G431650LXL04_030791JCVI_TKOH_00314100.070.312 / 12.535Complex
TkA07G431870LXL04_030797JCVI_TKOH_00314100.054.587 / 13.311Complex
TkA07G432170LXL04_030799JCVI_TKOH_0031499.8100.0 / 100.0Strict
TkA07G432240LXL04_030800JCVI_TKOH_00314100.0100.0 / 100.0Review
TkA07G432260LXL04_030802JCVI_TKOH_0031499.8100.0 / 100.0Strict
TkA07G432270LXL04_030803JCVI_TKOH_0031496.194.769 / 97.533Complex
TkA07G432760LXL04_030804JCVI_TKOH_0031499.5100.0 / 100.0Strict
TkA07G432840LXL04_030807JCVI_TKOH_0031498.973.643 / 96.939Probable
TkA07G432910LXL04_030809JCVI_TKOH_00314100.083.613 / 83.613Strict
TkA07G432940LXL04_030810JCVI_TKOH_0031499.756.218 / 68.323Review
TkA07G432950LXL04_030811JCVI_TKOH_0031498.8100.0 / 33.233Review
TkA07G432960LXL04_030811JCVI_TKOH_0031497.998.834 / 63.7Review
TkA07G433560LXL04_030819JCVI_TKOH_00314100.0100.0 / 67.839Review
TkA07G433720LXL04_030820JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G433760LXL04_030821JCVI_TKOH_0031491.5100.0 / 100.0Probable
TkA07G433960LXL04_030822JCVI_TKOH_0031499.7100.0 / 100.0Strict
TkA07G434030LXL04_030823JCVI_TKOH_0031499.497.778 / 57.249Review
TkA07G434110LXL04_030825JCVI_TKOH_00314100.0100.0 / 100.0Complex
TkA07G435070LXL04_030827JCVI_TKOH_0031499.599.25 / 90.227Complex
TkA07G435120LXL04_030829JCVI_TKOH_0031498.3100.0 / 100.0Strict
TkA07G435130LXL04_030830JCVI_TKOH_0031499.596.852 / 70.922Complex
TkA07G435140LXL04_030831JCVI_TKOH_0031492.1100.0 / 74.233Complex
TkA07G435150LXL04_030832JCVI_TKOH_0031490.6100.0 / 100.0Probable
TkA07G435180LXL04_030833JCVI_TKOH_0031499.5100.0 / 100.0Strict
TkA07G435190LXL04_030834JCVI_TKOH_0031498.8100.0 / 100.0Strict
TkA07G435200LXL04_030835JCVI_TKOH_00314100.0100.0 / 100.0Review
TkA07G436340LXL04_030840JCVI_TKOH_00314100.0100.0 / 100.0Review
TkA07G436510LXL04_030841JCVI_TKOH_0031499.9100.0 / 98.177Strict
TkA07G436880LXL04_030842JCVI_TKOH_0031499.793.103 / 100.0Strict
TkA07G436890LXL04_030843JCVI_TKOH_0031491.5100.0 / 100.0Probable
TkA07G436910LXL04_030844JCVI_TKOH_0031499.4100.0 / 97.093Strict
TkA07G436940LXL04_030846JCVI_TKOH_0031496.096.594 / 60.487Complex
TkA07G437000LXL04_030848JCVI_TKOH_00314100.098.132 / 98.132Complex
TkA07G437060LXL04_030849JCVI_TKOH_0031492.4100.0 / 100.0Probable
TkA07G437070LXL04_030850JCVI_TKOH_0031491.1100.0 / 100.0Complex
TkA07G437080LXL04_030851JCVI_TKOH_0031491.6100.0 / 100.0Probable
TkA07G437130LXL04_030852JCVI_TKOH_0031497.5100.0 / 100.0Complex
TkA07G437250LXL04_030853JCVI_TKOH_0031498.6100.0 / 100.0Strict
TkA07G437310LXL04_030855JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G437320LXL04_030856JCVI_TKOH_0031499.8100.0 / 100.0Strict
TkA07G437350LXL04_030857JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G437380LXL04_030858JCVI_TKOH_00314100.0100.0 / 100.0Complex
TkA07G437390LXL04_030860JCVI_TKOH_00314100.086.713 / 56.109Review
TkA07G437610LXL04_030866JCVI_TKOH_00314100.0100.0 / 100.0Complex
TkA07G437630LXL04_030867JCVI_TKOH_0031475.0100.0 / 60.577Review
TkA07G437830LXL04_030868JCVI_TKOH_0031487.8100.0 / 100.0Complex
TkA07G438000LXL04_030871JCVI_TKOH_0031499.8100.0 / 100.0Strict
TkA07G438020LXL04_030873JCVI_TKOH_0031498.9100.0 / 96.011Strict
TkA07G438050LXL04_030874JCVI_TKOH_0031496.288.889 / 100.0Strict
TkA07G438070LXL04_030875JCVI_TKOH_0031499.591.736 / 95.484Strict
TkA07G438120LXL04_030876JCVI_TKOH_00314100.0100.0 / 100.0Review
TkA07G438200LXL04_030877JCVI_TKOH_00314100.0100.0 / 100.0Review
TkA07G438270LXL04_030878JCVI_TKOH_0031494.589.024 / 48.936Review
TkA07G438280LXL04_030879JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G438410LXL04_030882JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G438420LXL04_030884JCVI_TKOH_0031499.6100.0 / 100.0Strict
TkA07G438600LXL04_030886JCVI_TKOH_0031499.6100.0 / 100.0Strict
TkA07G438620LXL04_030887JCVI_TKOH_00314100.0100.0 / 100.0Review
TkA07G438670LXL04_030888JCVI_TKOH_0031498.698.374 / 79.605Complex
TkA07G439170LXL04_030893JCVI_TKOH_00314100.0100.0 / 44.111Review
TkA07G439860LXL04_030898JCVI_TKOH_00314100.0100.0 / 99.167Strict
TkA07G439880LXL04_030900JCVI_TKOH_00314100.0100.0 / 58.137Review
TkA07G439910LXL04_030900JCVI_TKOH_00314100.095.268 / 37.516Review
TkA07G439930LXL04_030901JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G439960LXL04_030904JCVI_TKOH_0031499.6100.0 / 100.0Strict
TkA07G439990LXL04_030905JCVI_TKOH_0031498.4100.0 / 100.0Strict
TkA07G440060LXL04_030924JCVI_TKOH_0031495.686.254 / 98.988Strict
TkA07G440070LXL04_030929JCVI_TKOH_0031485.3100.0 / 100.0Review
TkA07G440100LXL04_030909JCVI_TKOH_0031475.8100.0 / 100.0Review
TkA07G440110LXL04_030929JCVI_TKOH_0031498.246.281 / 9.38Complex
TkA07G440120LXL04_030908JCVI_TKOH_0031476.675.316 / 81.481Complex
TkA07G440140LXL04_030931JCVI_TKOH_0031491.7100.0 / 100.0Complex
TkA07G440150LXL04_030932JCVI_TKOH_0031490.5100.0 / 100.0Probable
TkA07G440160LXL04_030933JCVI_TKOH_0031495.699.517 / 100.0Strict
TkA07G440300LXL04_030935JCVI_TKOH_0031491.0100.0 / 72.147Probable
TkA07G440460LXL04_030936JCVI_TKOH_0031499.1100.0 / 85.075Strict
TkA07G440520LXL04_030937JCVI_TKOH_0031499.0100.0 / 100.0Strict
TkA07G440540LXL04_030938JCVI_TKOH_0031498.1100.0 / 100.0Strict
TkA07G440550LXL04_030939JCVI_TKOH_0031497.1100.0 / 100.0Strict
TkA07G440660LXL04_030941JCVI_TKOH_0031499.7100.0 / 93.438Complex
TkA07G440680LXL04_030942JCVI_TKOH_0031496.7100.0 / 77.333Probable
TkA07G440690LXL04_030943JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G440700LXL04_030944JCVI_TKOH_00314100.099.331 / 85.1Complex
TkA07G440710LXL04_030944JCVI_TKOH_0031479.599.333 / 85.1Complex
TkA07G440920LXL04_030947JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G440930LXL04_030948JCVI_TKOH_0031499.297.579 / 74.568Probable
TkA07G440950LXL04_030949JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G441000LXL04_030950JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G441010LXL04_030951JCVI_TKOH_0031499.799.242 / 97.037Strict
TkA07G441050LXL04_030953JCVI_TKOH_0031499.296.97 / 36.571Review
TkA07G441070LXL04_030954JCVI_TKOH_00314100.0100.0 / 100.0Complex
TkA07G441260LXL04_030955JCVI_TKOH_00314100.0100.0 / 81.062Complex
TkA07G441270LXL04_030956JCVI_TKOH_00314100.0100.0 / 100.0Review
TkA07G441360LXL04_030957JCVI_TKOH_00314100.0100.0 / 100.0Complex
TkA07G441370LXL04_030958JCVI_TKOH_00314100.098.519 / 98.519Strict
TkA07G441430LXL04_030959JCVI_TKOH_0031497.0100.0 / 67.003Review
TkA07G441440LXL04_030960JCVI_TKOH_0031499.9100.0 / 69.615Review
TkA07G441600LXL04_030961JCVI_TKOH_0031498.4100.0 / 100.0Strict
TkA07G441610LXL04_030962JCVI_TKOH_0031498.0100.0 / 100.0Strict
TkA07G441660LXL04_030963JCVI_TKOH_0031499.3100.0 / 100.0Strict
TkA07G441690LXL04_030964JCVI_TKOH_0031482.468.0 / 100.0Review
TkA07G441740LXL04_030965JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G441750LXL04_030966JCVI_TKOH_0031498.3100.0 / 86.652Strict
TkA07G442020LXL04_030967JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G442050LXL04_030968JCVI_TKOH_0031499.7100.0 / 100.0Strict
TkA07G442370LXL04_030969JCVI_TKOH_0031498.8100.0 / 100.0Complex
TkA07G442390LXL04_030970JCVI_TKOH_0031499.8100.0 / 100.0Strict
TkA07G442420LXL04_030971JCVI_TKOH_00314100.0100.0 / 69.231Complex
TkA07G442710LXL04_030973JCVI_TKOH_0031499.7100.0 / 60.073Complex
TkA07G442730LXL04_030974JCVI_TKOH_00314100.0100.0 / 100.0Complex
TkA07G442780LXL04_030975JCVI_TKOH_0031499.3100.0 / 100.0Strict
TkA07G442840LXL04_030977JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G442850LXL04_030979JCVI_TKOH_00314100.0100.0 / 79.167Probable
TkA07G442860LXL04_030980JCVI_TKOH_0031499.8100.0 / 100.0Strict
TkA07G442890LXL04_030981JCVI_TKOH_00314100.0100.0 / 100.0Review
TkA07G443000LXL04_030982JCVI_TKOH_0031471.937.255 / 34.783Review
TkA07G443040LXL04_030983JCVI_TKOH_0031499.2100.0 / 100.0Review
TkA07G443080LXL04_030984JCVI_TKOH_00314100.096.939 / 59.499Review
TkA07G443220LXL04_030980JCVI_TKOH_00314100.0100.0 / 40.26Review
TkA07G443250LXL04_030981JCVI_TKOH_00314100.0100.0 / 100.0Review
TkA07G443390LXL04_030982JCVI_TKOH_0031471.937.255 / 34.783Complex
TkA07G443480LXL04_030984JCVI_TKOH_00314100.096.244 / 42.797Review
TkA07G443500LXL04_030985JCVI_TKOH_0031497.968.545 / 56.809Review
TkA07G443790LXL04_030989JCVI_TKOH_00314100.088.462 / 33.333Review
TkA07G443800LXL04_030990JCVI_TKOH_0031499.799.679 / 97.188Complex
TkA07G443810LXL04_030991JCVI_TKOH_00314100.0100.0 / 68.464Complex
TkA07G443940LXL04_030993JCVI_TKOH_0031498.9100.0 / 100.0Review
TkA07G443950LXL04_030994JCVI_TKOH_0031499.398.19 / 68.775Review
TkA07G443960LXL04_030994JCVI_TKOH_0031499.2100.0 / 30.672Review
TkA07G443970LXL04_030995JCVI_TKOH_0031498.8100.0 / 100.0Complex
TkA07G444170LXL04_030996JCVI_TKOH_0031499.589.778 / 100.0Strict
TkA07G444270LXL04_030997JCVI_TKOH_0031499.4100.0 / 100.0Complex
TkA07G444280LXL04_030998JCVI_TKOH_0031499.0100.0 / 100.0Strict
TkA07G444690LXL04_031001JCVI_TKOH_00314100.067.2 / 47.191Review
TkA07G444710LXL04_031002JCVI_TKOH_0031497.6100.0 / 60.688Complex
TkA07G444760LXL04_031003JCVI_TKOH_0031494.9100.0 / 88.117Probable
TkA07G444770LXL04_031004JCVI_TKOH_0031492.6100.0 / 100.0Probable
TkA07G444880LXL04_031005JCVI_TKOH_0031499.8100.0 / 100.0Strict
TkA07G445040LXL04_031007JCVI_TKOH_0031486.1100.0 / 100.0Review
TkA07G445160LXL04_031008JCVI_TKOH_0031499.5100.0 / 96.262Complex
TkA07G445230LXL04_031009JCVI_TKOH_0031497.499.827 / 48.229Review
TkA07G445240LXL04_031011JCVI_TKOH_00314100.0100.0 / 100.0Strict
TkA07G445250LXL04_031012JCVI_TKOH_0031499.6100.0 / 100.0Complex