LXL04_030827 | RubberDandelionOmics

Gene overview

LXL04_030827

Reference: OH-1004 Chr: Chr06 Coordinates: 123665749-123668879 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1323 bp · LXL04_030827|LXL04_030827|OH1004|cDNA

atgCATGTGGTACACCCGCCCAAGACTCCGGATTCCGCCGGCGATGATGATGATCAAGCGCCGGAACTTCTCCGGACATACCAGACTTGGAAAGGAAGCAACATATTTTTTCTAGGTGGAAGGTTCATATTCGGACCAGATGTCAGATCAGTATTCCTATCCATATTCCTAATCGTCGCCCCTGTTTCAATCTTCTGTGCATTTGTCGCCAGAAAACTCCTCAATGATTTTCCTCATCACCTAGGAGTACTCATCATGGC...

CDS

Download CDS FASTA

1323 bp · LXL04_030827|LXL04_030827|OH1004|CDS

ATGCATGTGGTACACCCGCCCAAGACTCCGGATTCCGCCGGCGATGATGATGATCAAGCGCCGGAACTTCTCCGGACATACCAGACTTGGAAAGGAAGCAACATATTTTTTCTAGGTGGAAGGTTCATATTCGGACCAGATGTCAGATCAGTATTCCTATCCATATTCCTAATCGTCGCCCCTGTTTCAATCTTCTGTGCATTTGTCGCCAGAAAACTCCTCAATGATTTTCCTCATCACCTAGGAGTACTCATCATGGC...

Protein

Download Protein FASTA

440 aa · LXL04_030827|LXL04_030827|OH1004|PROTEIN

MHVVHPPKTPDSAGDDDDQAPELLRTYQTWKGSNIFFLGGRFIFGPDVRSVFLSIFLIVAPVSIFCAFVARKLLNDFPHHLGVLIMAVVIIFTFYVIILLLMTSGRDPGIIPRNTHPPQPELTDPDQEPGSGHQTPQLRLPRVKEVMVNGMIVKVKYCDTCMLYRPPRCSHCSICDNCVERFDHHCPWVGQCIGRRNYRFFFMFVSSATLLCVYVFGFCWVYAIRIMNSEEISIWRALIKTPASIGLIIYTFLVIWFVGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030827`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030827

Location Chr06:123665749-123668879 (+)

Description Similar to PAT07: Probable protein S-acyltransferase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26935`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At5g41060`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At3g48760`	Palmitoyl acyltransferase.	No verified direct reference in this release
`At4g24630`	S-acyltransferase involved in protein lipid modification.	No verified direct reference in this release
`At3g56930`	Palmitoyl acyltransferase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030827 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006612 protein targeting to membrane Biological Process

GO:0048767 root hair elongation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0030140 trans-Golgi network transport vesicle Cellular Component

GO:0035618 root hair Cellular Component

GO:0019706 protein-cysteine S-palmitoyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G26935

ath:AT3G48760

ath:AT3G56930

ath:AT4G24630

ath:AT5G41060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.351

Rank 1 · LXL04_030827 · OH-1004

Golgi apparatus0.282

Rank 2 · LXL04_030827 · OH-1004

Cell membrane0.196

Rank 3 · LXL04_030827 · OH-1004

Cytoplasm0.193

Rank 4 · LXL04_030827 · OH-1004

Lysosome / Vacuole0.146

Rank 5 · LXL04_030827 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01529.26DHHC156-280 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030827	`PF01529.26`	DHHC	156	280	6.2e-38	130.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WQK2`	Arabidopsis thaliana	Probable protein S-acyltransferase 7	58.333%	Swiss-Prot	strong database homology
`Q9FLM3`	Arabidopsis thaliana	Probable protein S-acyltransferase 6	65.043%	Swiss-Prot	strong database homology
`Q9M306`	Arabidopsis thaliana	Probable protein S-acyltransferase 5	62.805%	Swiss-Prot	strong database homology
`Q9SB58`	Arabidopsis thaliana	Protein S-acyltransferase 8	52.163%	Swiss-Prot	strong database homology
`Q9M1K5`	Arabidopsis thaliana	Probable protein S-acyltransferase 4	55.325%	Swiss-Prot	strong database homology

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