Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00304

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 267

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00304

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00304 Chr07 21035079-31930271 Chr06 20642652-31412615 mixed High 67 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00304`	Chr07:21035079-31930271	Chr06:20642652-31412615	mixed	267	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 267 · Showing 201–267 · Page 2/2

Previous Download All Anchors TSV

TkA07G110940 → LXL04_027987

98.7%

TkA07G111000 → LXL04_027988

100.0%

TkA07G111010 → LXL04_027990

100.0%

TkA07G111070 → LXL04_027993

81.6%

TkA07G111160 → LXL04_027994

93.8%

TkA07G111410 → LXL04_027995

99.6%

TkA07G111630 → LXL04_027997

99.0%

TkA07G111680 → LXL04_027998

100.0%

TkA07G111710 → LXL04_028001

91.1%

TkA07G111950 → LXL04_028005

100.0%

TkA07G111980 → LXL04_028006

95.7%

TkA07G112520 → LXL04_028008

63.9%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA07G110940`	`LXL04_027987`	`JCVI_TKOH_00304`	98.7	74.277 / 77.778	Review
`TkA07G111000`	`LXL04_027988`	`JCVI_TKOH_00304`	100.0	100.0 / 100.0	Strict
`TkA07G111010`	`LXL04_027990`	`JCVI_TKOH_00304`	100.0	100.0 / 100.0	Strict
`TkA07G111070`	`LXL04_027993`	`JCVI_TKOH_00304`	81.6	42.972 / 70.718	Review
`TkA07G111160`	`LXL04_027994`	`JCVI_TKOH_00304`	93.8	100.0 / 100.0	Probable
`TkA07G111410`	`LXL04_027995`	`JCVI_TKOH_00304`	99.6	100.0 / 100.0	Complex
`TkA07G111630`	`LXL04_027997`	`JCVI_TKOH_00304`	99.0	100.0 / 95.444	Strict
`TkA07G111680`	`LXL04_027998`	`JCVI_TKOH_00304`	100.0	97.688 / 82.843	Strict
`TkA07G111710`	`LXL04_028001`	`JCVI_TKOH_00304`	91.1	59.091 / 26.73	Review
`TkA07G111950`	`LXL04_028005`	`JCVI_TKOH_00304`	100.0	100.0 / 100.0	Complex
`TkA07G111980`	`LXL04_028006`	`JCVI_TKOH_00304`	95.7	100.0 / 93.769	Strict
`TkA07G112520`	`LXL04_028008`	`JCVI_TKOH_00304`	63.9	83.206 / 35.504	Complex
`TkA07G112530`	`LXL04_028009`	`JCVI_TKOH_00304`	100.0	100.0 / 100.0	Strict
`TkA07G112540`	`LXL04_028010`	`JCVI_TKOH_00304`	97.4	99.357 / 97.476	Review
`TkA07G112550`	`LXL04_028011`	`JCVI_TKOH_00304`	100.0	79.747 / 27.391	Complex
`TkA07G112560`	`LXL04_028011`	`JCVI_TKOH_00304`	100.0	100.0 / 38.043	Review
`TkA07G112740`	`LXL04_028012`	`JCVI_TKOH_00304`	97.0	100.0 / 100.0	Strict
`TkA07G112770`	`LXL04_028013`	`JCVI_TKOH_00304`	90.2	100.0 / 100.0	Probable
`TkA07G112790`	`LXL04_028014`	`JCVI_TKOH_00304`	99.5	100.0 / 100.0	Strict
`TkA07G113080`	`LXL04_028017`	`JCVI_TKOH_00304`	99.4	100.0 / 100.0	Strict
`TkA07G113370`	`LXL04_028018`	`JCVI_TKOH_00304`	91.5	78.205 / 98.138	Probable
`TkA07G113380`	`LXL04_028019`	`JCVI_TKOH_00304`	95.1	94.744 / 99.583	Strict
`TkA07G113500`	`LXL04_028021`	`JCVI_TKOH_00304`	82.9	100.0 / 75.51	Review
`TkA07G113560`	`LXL04_028022`	`JCVI_TKOH_00304`	94.8	100.0 / 100.0	Probable
`TkA07G114410`	`LXL04_028028`	`JCVI_TKOH_00304`	97.2	100.0 / 77.137	Probable
`TkA07G114740`	`LXL04_028030`	`JCVI_TKOH_00304`	100.0	100.0 / 100.0	Complex
`TkA07G114790`	`LXL04_028031`	`JCVI_TKOH_00304`	99.2	99.003 / 81.868	Complex
`TkA07G114800`	`LXL04_028032`	`JCVI_TKOH_00304`	100.0	100.0 / 98.205	Strict
`TkA07G114810`	`LXL04_028033`	`JCVI_TKOH_00304`	91.9	100.0 / 100.0	Probable
`TkA07G115140`	`LXL04_028038`	`JCVI_TKOH_00304`	100.0	89.831 / 84.574	Strict
`TkA07G115210`	`LXL04_028040`	`JCVI_TKOH_00304`	99.2	96.154 / 50.0	Review
`TkA07G115520`	`LXL04_028042`	`JCVI_TKOH_00304`	100.0	100.0 / 100.0	Strict
`TkA07G115550`	`LXL04_028045`	`JCVI_TKOH_00304`	96.0	100.0 / 100.0	Review
`TkA07G115640`	`LXL04_028046`	`JCVI_TKOH_00304`	99.8	100.0 / 100.0	Strict
`TkA07G115650`	`LXL04_028047`	`JCVI_TKOH_00304`	99.6	98.694 / 99.623	Strict
`TkA07G115660`	`LXL04_028048`	`JCVI_TKOH_00304`	99.4	100.0 / 100.0	Strict
`TkA07G115670`	`LXL04_028049`	`JCVI_TKOH_00304`	98.8	88.889 / 100.0	Strict
`TkA07G115680`	`LXL04_028051`	`JCVI_TKOH_00304`	99.6	100.0 / 100.0	Complex
`TkA07G115780`	`LXL04_028052`	`JCVI_TKOH_00304`	99.4	100.0 / 100.0	Strict
`TkA07G115790`	`LXL04_028053`	`JCVI_TKOH_00304`	97.6	100.0 / 91.446	Complex
`TkA07G115840`	`LXL04_028054`	`JCVI_TKOH_00304`	98.9	100.0 / 100.0	Strict
`TkA07G115890`	`LXL04_028055`	`JCVI_TKOH_00304`	100.0	100.0 / 100.0	Complex
`TkA07G116880`	`LXL04_028060`	`JCVI_TKOH_00304`	100.0	100.0 / 100.0	Strict
`TkA07G116900`	`LXL04_028061`	`JCVI_TKOH_00304`	80.3	95.023 / 100.0	Review
`TkA07G116930`	`LXL04_028062`	`JCVI_TKOH_00304`	69.7	99.608 / 97.541	Complex
`TkA07G117000`	`LXL04_028063`	`JCVI_TKOH_00304`	90.3	100.0 / 100.0	Probable
`TkA07G117230`	`LXL04_028064`	`JCVI_TKOH_00304`	89.8	94.059 / 84.914	Review
`TkA07G117470`	`LXL04_028068`	`JCVI_TKOH_00304`	99.4	100.0 / 100.0	Strict
`TkA07G117480`	`LXL04_028069`	`JCVI_TKOH_00304`	94.2	100.0 / 100.0	Complex
`TkA07G117800`	`LXL04_028070`	`JCVI_TKOH_00304`	100.0	100.0 / 100.0	Complex
`TkA07G118700`	`LXL04_028073`	`JCVI_TKOH_00304`	98.8	94.714 / 100.0	Strict
`TkA07G119750`	`LXL04_028080`	`JCVI_TKOH_00304`	100.0	100.0 / 100.0	Strict
`TkA07G120080`	`LXL04_028085`	`JCVI_TKOH_00304`	96.9	94.587 / 100.0	Complex
`TkA07G120420`	`LXL04_028087`	`JCVI_TKOH_00304`	100.0	99.63 / 50.947	Review
`TkA07G120480`	`LXL04_028088`	`JCVI_TKOH_00304`	99.5	95.431 / 71.483	Complex
`TkA07G120490`	`LXL04_028089`	`JCVI_TKOH_00304`	97.6	100.0 / 100.0	Strict
`TkA07G120500`	`LXL04_028090`	`JCVI_TKOH_00304`	99.8	100.0 / 100.0	Strict
`TkA07G120830`	`LXL04_028092`	`JCVI_TKOH_00304`	99.5	100.0 / 100.0	Strict
`TkA07G120860`	`LXL04_028093`	`JCVI_TKOH_00304`	99.0	100.0 / 100.0	Strict
`TkA07G121000`	`LXL04_028094`	`JCVI_TKOH_00304`	99.2	95.641 / 52.983	Review
`TkA07G121540`	`LXL04_028096`	`JCVI_TKOH_00304`	93.7	100.0 / 75.385	Probable
`TkA07G121660`	`LXL04_028097`	`JCVI_TKOH_00304`	99.5	87.56 / 92.424	Complex
`TkA07G122630`	`LXL04_028103`	`JCVI_TKOH_00304`	99.4	92.09 / 24.365	Review
`TkA07G122640`	`LXL04_028102`	`JCVI_TKOH_00304`	99.4	89.474 / 51.597	Review
`TkA07G122770`	`LXL04_028097`	`JCVI_TKOH_00304`	99.5	87.56 / 92.424	Complex
`TkA07G123100`	`LXL04_028105`	`JCVI_TKOH_00304`	98.2	100.0 / 100.0	Strict
`TkA07G123120`	`LXL04_028104`	`JCVI_TKOH_00304`	99.7	100.0 / 100.0	Strict