Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00155

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 52

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00155

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00155 Chr03 30154511-31233431 Chr05 116203880-117269789 - High 52 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00155`	Chr03:30154511-31233431	Chr05:116203880-117269789	-	52	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 52 · Showing 1–52 · Page 1/1

Download All Anchors TSV

TkA03G118020 → LXL04_025816

82.0%

TkA03G118110 → LXL04_025813

99.6%

TkA03G118680 → LXL04_025810

99.8%

TkA03G118700 → LXL04_025809

100.0%

TkA03G118710 → LXL04_025808

100.0%

TkA03G118720 → LXL04_025807

99.8%

TkA03G118940 → LXL04_025805

100.0%

TkA03G118950 → LXL04_025804

100.0%

TkA03G118960 → LXL04_025803

99.7%

TkA03G119020 → LXL04_025802

99.7%

TkA03G119030 → LXL04_025801

100.0%

TkA03G119040 → LXL04_025800

98.5%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA03G118020`	`LXL04_025816`	`JCVI_TKOH_00155`	82.0	100.0 / 72.119	Review
`TkA03G118110`	`LXL04_025813`	`JCVI_TKOH_00155`	99.6	100.0 / 100.0	Probable
`TkA03G118680`	`LXL04_025810`	`JCVI_TKOH_00155`	99.8	100.0 / 100.0	Complex
`TkA03G118700`	`LXL04_025809`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Probable
`TkA03G118710`	`LXL04_025808`	`JCVI_TKOH_00155`	100.0	100.0 / 96.165	Probable
`TkA03G118720`	`LXL04_025807`	`JCVI_TKOH_00155`	99.8	100.0 / 100.0	Probable
`TkA03G118940`	`LXL04_025805`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Probable
`TkA03G118950`	`LXL04_025804`	`JCVI_TKOH_00155`	100.0	99.819 / 99.819	Probable
`TkA03G118960`	`LXL04_025803`	`JCVI_TKOH_00155`	99.7	100.0 / 100.0	Probable
`TkA03G119020`	`LXL04_025802`	`JCVI_TKOH_00155`	99.7	100.0 / 100.0	Complex
`TkA03G119030`	`LXL04_025801`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Complex
`TkA03G119040`	`LXL04_025800`	`JCVI_TKOH_00155`	98.5	93.593 / 50.149	Review
`TkA03G119070`	`LXL04_025798`	`JCVI_TKOH_00155`	100.0	100.0 / 31.671	Review
`TkA03G119080`	`LXL04_025798`	`JCVI_TKOH_00155`	90.7	96.957 / 54.64	Complex
`TkA03G119120`	`LXL04_025797`	`JCVI_TKOH_00155`	97.3	100.0 / 77.406	Complex
`TkA03G119200`	`LXL04_025793`	`JCVI_TKOH_00155`	100.0	97.34 / 89.926	Probable
`TkA03G119340`	`LXL04_025791`	`JCVI_TKOH_00155`	99.4	96.328 / 94.46	Complex
`TkA03G119400`	`LXL04_025790`	`JCVI_TKOH_00155`	100.0	96.399 / 96.399	Complex
`TkA03G119460`	`LXL04_025787`	`JCVI_TKOH_00155`	96.7	100.0 / 49.793	Review
`TkA03G119590`	`LXL04_025785`	`JCVI_TKOH_00155`	100.0	99.242 / 27.406	Review
`TkA03G119760`	`LXL04_025781`	`JCVI_TKOH_00155`	65.8	100.0 / 67.064	Complex
`TkA03G119770`	`LXL04_025780`	`JCVI_TKOH_00155`	99.3	100.0 / 100.0	Review
`TkA03G119780`	`LXL04_025779`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Complex
`TkA03G119790`	`LXL04_025778`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Complex
`TkA03G119800`	`LXL04_025777`	`JCVI_TKOH_00155`	100.0	96.789 / 27.818	Review
`TkA03G119810`	`LXL04_025777`	`JCVI_TKOH_00155`	96.6	93.367 / 36.585	Review
`TkA03G119820`	`LXL04_025777`	`JCVI_TKOH_00155`	84.9	95.5 / 29.334	Complex
`TkA03G119830`	`LXL04_025776`	`JCVI_TKOH_00155`	89.5	100.0 / 100.0	Complex
`TkA03G119870`	`LXL04_025774`	`JCVI_TKOH_00155`	99.6	100.0 / 100.0	Review
`TkA03G119900`	`LXL04_025773`	`JCVI_TKOH_00155`	99.2	99.016 / 84.594	Complex
`TkA03G119910`	`LXL04_025771`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Review
`TkA03G119940`	`LXL04_025770`	`JCVI_TKOH_00155`	99.4	100.0 / 100.0	Probable
`TkA03G119960`	`LXL04_025769`	`JCVI_TKOH_00155`	97.4	81.277 / 25.365	Complex
`TkA03G120150`	`LXL04_025767`	`JCVI_TKOH_00155`	97.6	86.55 / 29.96	Review
`TkA03G120170`	`LXL04_025766`	`JCVI_TKOH_00155`	99.2	100.0 / 46.14	Review
`TkA03G120190`	`LXL04_025765`	`JCVI_TKOH_00155`	94.1	97.579 / 60.242	Review
`TkA03G120200`	`LXL04_025764`	`JCVI_TKOH_00155`	100.0	100.0 / 97.674	Complex
`TkA03G120220`	`LXL04_025763`	`JCVI_TKOH_00155`	100.0	92.149 / 59.626	Review
`TkA03G120270`	`LXL04_025762`	`JCVI_TKOH_00155`	100.0	100.0 / 42.08	Review
`TkA03G120300`	`LXL04_025761`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Complex
`TkA03G120320`	`LXL04_025760`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Complex
`TkA03G120360`	`LXL04_025758`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Probable
`TkA03G120370`	`LXL04_025757`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Review
`TkA03G120400`	`LXL04_025756`	`JCVI_TKOH_00155`	100.0	100.0 / 100.0	Review
`TkA03G120660`	`LXL04_025754`	`JCVI_TKOH_00155`	99.6	100.0 / 100.0	Complex
`TkA03G120910`	`LXL04_025752`	`JCVI_TKOH_00155`	99.7	100.0 / 100.0	Review
`TkA03G120930`	`LXL04_025751`	`JCVI_TKOH_00155`	99.5	100.0 / 100.0	Complex
`TkA03G120940`	`LXL04_025749`	`JCVI_TKOH_00155`	95.0	100.0 / 100.0	Complex
`TkA03G121620`	`LXL04_025745`	`JCVI_TKOH_00155`	98.4	99.457 / 100.0	Complex
`TkA03G122010`	`LXL04_025744`	`JCVI_TKOH_00155`	95.3	99.156 / 71.646	Complex
`TkA03G122130`	`LXL04_025743`	`JCVI_TKOH_00155`	49.5	51.429 / 59.104	Complex
`TkA03G122150`	`LXL04_025742`	`JCVI_TKOH_00155`	98.1	95.0 / 83.912	Complex