Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00260

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 41

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00260

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00260 Chr06 2547833-3118928 Chr05 126226324-126949061 mixed High 41 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00260`	Chr06:2547833-3118928	Chr05:126226324-126949061	mixed	41	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 41 · Showing 1–41 · Page 1/1

Download All Anchors TSV

TkA06G009940 → LXL04_026432

89.3%

TkA06G009980 → LXL04_026434

99.7%

TkA06G009990 → LXL04_026435

96.8%

TkA06G010110 → LXL04_026436

97.1%

TkA06G010120 → LXL04_026436

93.0%

TkA06G010170 → LXL04_026437

86.5%

TkA06G010380 → LXL04_026439

97.8%

TkA06G010400 → LXL04_026440

100.0%

TkA06G010470 → LXL04_026442

100.0%

TkA06G010510 → LXL04_026443

99.9%

TkA06G010530 → LXL04_026444

99.8%

TkA06G010580 → LXL04_026447

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA06G009940`	`LXL04_026432`	`JCVI_TKOH_00260`	89.3	100.0 / 57.5	Complex
`TkA06G009980`	`LXL04_026434`	`JCVI_TKOH_00260`	99.7	100.0 / 100.0	Review
`TkA06G009990`	`LXL04_026435`	`JCVI_TKOH_00260`	96.8	99.365 / 35.108	Review
`TkA06G010110`	`LXL04_026436`	`JCVI_TKOH_00260`	97.1	100.0 / 100.0	Complex
`TkA06G010120`	`LXL04_026436`	`JCVI_TKOH_00260`	93.0	100.0 / 100.0	Complex
`TkA06G010170`	`LXL04_026437`	`JCVI_TKOH_00260`	86.5	82.687 / 100.0	Complex
`TkA06G010380`	`LXL04_026439`	`JCVI_TKOH_00260`	97.8	63.571 / 18.313	Review
`TkA06G010400`	`LXL04_026440`	`JCVI_TKOH_00260`	100.0	94.958 / 20.849	Review
`TkA06G010470`	`LXL04_026442`	`JCVI_TKOH_00260`	100.0	100.0 / 100.0	Complex
`TkA06G010510`	`LXL04_026443`	`JCVI_TKOH_00260`	99.9	100.0 / 100.0	Strict
`TkA06G010530`	`LXL04_026444`	`JCVI_TKOH_00260`	99.8	95.01 / 97.633	Complex
`TkA06G010580`	`LXL04_026447`	`JCVI_TKOH_00260`	100.0	100.0 / 100.0	Strict
`TkA06G010600`	`LXL04_026448`	`JCVI_TKOH_00260`	99.8	100.0 / 100.0	Strict
`TkA06G010610`	`LXL04_026449`	`JCVI_TKOH_00260`	100.0	100.0 / 100.0	Review
`TkA06G010620`	`LXL04_026450`	`JCVI_TKOH_00260`	100.0	100.0 / 95.108	Strict
`TkA06G010730`	`LXL04_026451`	`JCVI_TKOH_00260`	96.0	100.0 / 100.0	Strict
`TkA06G010740`	`LXL04_026452`	`JCVI_TKOH_00260`	79.1	84.038 / 67.474	Complex
`TkA06G010760`	`LXL04_026453`	`JCVI_TKOH_00260`	98.3	97.776 / 74.537	Probable
`TkA06G010800`	`LXL04_026454`	`JCVI_TKOH_00260`	100.0	100.0 / 100.0	Complex
`TkA06G010950`	`LXL04_026458`	`JCVI_TKOH_00260`	98.2	94.958 / 99.123	Review
`TkA06G011040`	`LXL04_026459`	`JCVI_TKOH_00260`	99.4	100.0 / 100.0	Strict
`TkA06G011110`	`LXL04_026462`	`JCVI_TKOH_00260`	82.4	93.117 / 29.715	Complex
`TkA06G011120`	`LXL04_026462`	`JCVI_TKOH_00260`	100.0	49.339 / 12.281	Complex
`TkA06G011210`	`LXL04_026463`	`JCVI_TKOH_00260`	94.9	100.0 / 100.0	Probable
`TkA06G011220`	`LXL04_026465`	`JCVI_TKOH_00260`	96.0	100.0 / 100.0	Complex
`TkA06G011240`	`LXL04_026465`	`JCVI_TKOH_00260`	64.1	85.714 / 98.99	Complex
`TkA06G011460`	`LXL04_026465`	`JCVI_TKOH_00260`	64.2	96.732 / 99.663	Complex
`TkA06G011480`	`LXL04_026466`	`JCVI_TKOH_00260`	86.6	100.0 / 24.969	Complex
`TkA06G011520`	`LXL04_026466`	`JCVI_TKOH_00260`	100.0	100.0 / 39.13	Review
`TkA06G011530`	`LXL04_026467`	`JCVI_TKOH_00260`	100.0	94.286 / 13.769	Review
`TkA06G011570`	`LXL04_026467`	`JCVI_TKOH_00260`	33.8	88.742 / 47.149	Complex
`TkA06G011580`	`LXL04_026468`	`JCVI_TKOH_00260`	88.6	91.713 / 41.412	Review
`TkA06G011700`	`LXL04_026470`	`JCVI_TKOH_00260`	99.7	100.0 / 100.0	Strict
`TkA06G011720`	`LXL04_026471`	`JCVI_TKOH_00260`	97.4	81.283 / 27.636	Review
`TkA06G011740`	`LXL04_026472`	`JCVI_TKOH_00260`	69.0	100.0 / 100.0	Review
`TkA06G011750`	`LXL04_026473`	`JCVI_TKOH_00260`	99.2	100.0 / 100.0	Strict
`TkA06G011790`	`LXL04_026475`	`JCVI_TKOH_00260`	99.2	100.0 / 100.0	Strict
`TkA06G011810`	`LXL04_026476`	`JCVI_TKOH_00260`	99.1	100.0 / 57.216	Review
`TkA06G011820`	`LXL04_026477`	`JCVI_TKOH_00260`	99.7	100.0 / 100.0	Strict
`TkA06G011830`	`LXL04_026478`	`JCVI_TKOH_00260`	100.0	100.0 / 100.0	Complex
`TkA06G011860`	`LXL04_026480`	`JCVI_TKOH_00260`	98.4	100.0 / 75.153	Probable