Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00204

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 113

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00204

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00204 Chr04 106842081-113054055 Chr09 39409463-45866182 mixed High 113 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00204`	Chr04:106842081-113054055	Chr09:39409463-45866182	mixed	113	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 113 · Showing 1–113 · Page 1/1

Download All Anchors TSV

TkA04G423800 → LXL04_038385

98.8%

TkA04G423890 → LXL04_038386

98.7%

TkA04G424220 → LXL04_038386

71.7%

TkA04G424460 → LXL04_038390

98.0%

TkA04G424760 → LXL04_038393

98.2%

TkA04G424830 → LXL04_038395

96.7%

TkA04G424860 → LXL04_038396

98.8%

TkA04G425280 → LXL04_038401

98.7%

TkA04G425420 → LXL04_038406

99.5%

TkA04G425430 → LXL04_038405

93.4%

TkA04G425810 → LXL04_038411

91.0%

TkA04G425850 → LXL04_038412

98.8%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA04G423800`	`LXL04_038385`	`JCVI_TKOH_00204`	98.8	100.0 / 100.0	Strict
`TkA04G423890`	`LXL04_038386`	`JCVI_TKOH_00204`	98.7	100.0 / 100.0	Complex
`TkA04G424220`	`LXL04_038386`	`JCVI_TKOH_00204`	71.7	97.721 / 54.416	Complex
`TkA04G424460`	`LXL04_038390`	`JCVI_TKOH_00204`	98.0	100.0 / 96.732	Strict
`TkA04G424760`	`LXL04_038393`	`JCVI_TKOH_00204`	98.2	95.395 / 67.543	Complex
`TkA04G424830`	`LXL04_038395`	`JCVI_TKOH_00204`	96.7	100.0 / 100.0	Strict
`TkA04G424860`	`LXL04_038396`	`JCVI_TKOH_00204`	98.8	78.571 / 100.0	Probable
`TkA04G425280`	`LXL04_038401`	`JCVI_TKOH_00204`	98.7	83.56 / 94.863	Complex
`TkA04G425420`	`LXL04_038406`	`JCVI_TKOH_00204`	99.5	100.0 / 100.0	Strict
`TkA04G425430`	`LXL04_038405`	`JCVI_TKOH_00204`	93.4	96.943 / 100.0	Complex
`TkA04G425810`	`LXL04_038411`	`JCVI_TKOH_00204`	91.0	93.315 / 87.351	Probable
`TkA04G425850`	`LXL04_038412`	`JCVI_TKOH_00204`	98.8	100.0 / 100.0	Strict
`TkA04G426010`	`LXL04_038413`	`JCVI_TKOH_00204`	99.8	93.367 / 86.35	Strict
`TkA04G426030`	`LXL04_038414`	`JCVI_TKOH_00204`	100.0	100.0 / 100.0	Review
`TkA04G426180`	`LXL04_038415`	`JCVI_TKOH_00204`	89.4	99.196 / 81.612	Complex
`TkA04G426930`	`LXL04_038416`	`JCVI_TKOH_00204`	98.5	99.618 / 98.495	Strict
`TkA04G427370`	`LXL04_038420`	`JCVI_TKOH_00204`	99.3	83.721 / 80.447	Strict
`TkA04G427680`	`LXL04_038421`	`JCVI_TKOH_00204`	96.4	100.0 / 100.0	Complex
`TkA04G427780`	`LXL04_038424`	`JCVI_TKOH_00204`	97.1	100.0 / 100.0	Review
`TkA04G428180`	`LXL04_038431`	`JCVI_TKOH_00204`	98.9	100.0 / 27.081	Review
`TkA04G428380`	`LXL04_038432`	`JCVI_TKOH_00204`	95.4	100.0 / 100.0	Strict
`TkA04G428400`	`LXL04_038434`	`JCVI_TKOH_00204`	94.9	100.0 / 100.0	Review
`TkA04G428810`	`LXL04_038436`	`JCVI_TKOH_00204`	100.0	99.007 / 76.0	Complex
`TkA04G428860`	`LXL04_038437`	`JCVI_TKOH_00204`	100.0	100.0 / 100.0	Strict
`TkA04G428870`	`LXL04_038439`	`JCVI_TKOH_00204`	99.8	71.784 / 90.418	Complex
`TkA04G428970`	`LXL04_038441`	`JCVI_TKOH_00204`	99.5	100.0 / 80.237	Strict
`TkA04G429520`	`LXL04_038445`	`JCVI_TKOH_00204`	97.0	6.653 / 0.857	Review
`TkA04G430750`	`LXL04_038459`	`JCVI_TKOH_00204`	45.6	100.0 / 69.787	Complex
`TkA04G431030`	`LXL04_038454`	`JCVI_TKOH_00204`	99.4	100.0 / 100.0	Complex
`TkA04G431440`	`LXL04_038456`	`JCVI_TKOH_00204`	89.5	100.0 / 100.0	Review
`TkA04G431480`	`LXL04_038457`	`JCVI_TKOH_00204`	99.6	100.0 / 100.0	Strict
`TkA04G431590`	`LXL04_038459`	`JCVI_TKOH_00204`	89.8	100.0 / 54.468	Complex
`TkA04G432480`	`LXL04_038462`	`JCVI_TKOH_00204`	97.0	100.0 / 100.0	Strict
`TkA04G432540`	`LXL04_038463`	`JCVI_TKOH_00204`	99.4	100.0 / 100.0	Strict
`TkA04G432620`	`LXL04_038464`	`JCVI_TKOH_00204`	99.3	100.0 / 100.0	Strict
`TkA04G432790`	`LXL04_038465`	`JCVI_TKOH_00204`	100.0	100.0 / 100.0	Strict
`TkA04G432990`	`LXL04_038468`	`JCVI_TKOH_00204`	99.6	87.97 / 100.0	Strict
`TkA04G433110`	`LXL04_038469`	`JCVI_TKOH_00204`	97.3	85.342 / 100.0	Complex
`TkA04G433160`	`LXL04_038475`	`JCVI_TKOH_00204`	96.0	97.297 / 54.899	Review
`TkA04G433460`	`LXL04_038479`	`JCVI_TKOH_00204`	99.4	100.0 / 100.0	Strict
`TkA04G433800`	`LXL04_038482`	`JCVI_TKOH_00204`	100.0	100.0 / 100.0	Review
`TkA04G434190`	`LXL04_038484`	`JCVI_TKOH_00204`	100.0	100.0 / 81.868	Complex
`TkA04G434460`	`LXL04_038486`	`JCVI_TKOH_00204`	79.9	98.122 / 83.582	Review
`TkA04G434690`	`LXL04_038490`	`JCVI_TKOH_00204`	99.7	100.0 / 100.0	Complex
`TkA04G434700`	`LXL04_038491`	`JCVI_TKOH_00204`	97.4	100.0 / 100.0	Review
`TkA04G434730`	`LXL04_038494`	`JCVI_TKOH_00204`	98.6	100.0 / 100.0	Review
`TkA04G434740`	`LXL04_038495`	`JCVI_TKOH_00204`	93.1	100.0 / 100.0	Complex
`TkA04G434750`	`LXL04_038496`	`JCVI_TKOH_00204`	97.5	100.0 / 100.0	Complex
`TkA04G434880`	`LXL04_038498`	`JCVI_TKOH_00204`	99.5	100.0 / 100.0	Complex
`TkA04G434960`	`LXL04_038499`	`JCVI_TKOH_00204`	99.0	95.873 / 68.864	Review
`TkA04G434970`	`LXL04_038500`	`JCVI_TKOH_00204`	92.4	100.0 / 50.411	Complex
`TkA04G435360`	`LXL04_038505`	`JCVI_TKOH_00204`	99.5	100.0 / 95.272	Complex
`TkA04G435630`	`LXL04_038508`	`JCVI_TKOH_00204`	98.5	96.117 / 89.908	Complex
`TkA04G435840`	`LXL04_038490`	`JCVI_TKOH_00204`	99.5	95.707 / 96.701	Complex
`TkA04G435850`	`LXL04_038491`	`JCVI_TKOH_00204`	98.8	96.212 / 74.706	Complex
`TkA04G435880`	`LXL04_038494`	`JCVI_TKOH_00204`	99.5	100.0 / 100.0	Review
`TkA04G435910`	`LXL04_038495`	`JCVI_TKOH_00204`	95.9	100.0 / 100.0	Complex
`TkA04G435920`	`LXL04_038496`	`JCVI_TKOH_00204`	97.5	100.0 / 100.0	Complex
`TkA04G436120`	`LXL04_038498`	`JCVI_TKOH_00204`	99.5	100.0 / 100.0	Complex
`TkA04G436180`	`LXL04_038500`	`JCVI_TKOH_00204`	93.7	100.0 / 50.411	Complex
`TkA04G436480`	`LXL04_038505`	`JCVI_TKOH_00204`	99.0	100.0 / 95.272	Complex
`TkA04G436790`	`LXL04_038508`	`JCVI_TKOH_00204`	98.8	87.302 / 75.229	Complex
`TkA04G436940`	`LXL04_038513`	`JCVI_TKOH_00204`	86.6	98.551 / 92.969	Complex
`TkA04G437260`	`LXL04_038513`	`JCVI_TKOH_00204`	99.0	100.0 / 100.0	Complex
`TkA04G437510`	`LXL04_038514`	`JCVI_TKOH_00204`	97.6	62.437 / 72.781	Review
`TkA04G438400`	`LXL04_038517`	`JCVI_TKOH_00204`	96.4	100.0 / 92.478	Complex
`TkA04G438450`	`LXL04_038520`	`JCVI_TKOH_00204`	78.2	100.0 / 66.875	Review
`TkA04G438490`	`LXL04_038519`	`JCVI_TKOH_00204`	88.5	75.839 / 69.753	Review
`TkA04G438570`	`LXL04_038521`	`JCVI_TKOH_00204`	99.0	73.684 / 21.03	Complex
`TkA04G438580`	`LXL04_038522`	`JCVI_TKOH_00204`	99.5	100.0 / 100.0	Strict
`TkA04G438670`	`LXL04_038523`	`JCVI_TKOH_00204`	99.8	100.0 / 100.0	Strict
`TkA04G438740`	`LXL04_038524`	`JCVI_TKOH_00204`	100.0	100.0 / 100.0	Complex
`TkA04G438870`	`LXL04_038525`	`JCVI_TKOH_00204`	93.8	100.0 / 100.0	Complex
`TkA04G439370`	`LXL04_038527`	`JCVI_TKOH_00204`	100.0	100.0 / 88.889	Strict
`TkA04G439490`	`LXL04_038529`	`JCVI_TKOH_00204`	99.6	100.0 / 100.0	Complex
`TkA04G439650`	`LXL04_038531`	`JCVI_TKOH_00204`	80.0	100.0 / 68.323	Complex
`TkA04G439730`	`LXL04_038530`	`JCVI_TKOH_00204`	96.4	98.225 / 11.951	Review
`TkA04G440110`	`LXL04_038533`	`JCVI_TKOH_00204`	98.5	100.0 / 94.909	Complex
`TkA04G440400`	`LXL04_038536`	`JCVI_TKOH_00204`	97.6	100.0 / 100.0	Complex
`TkA04G440430`	`LXL04_038537`	`JCVI_TKOH_00204`	99.8	100.0 / 100.0	Complex
`TkA04G440440`	`LXL04_038538`	`JCVI_TKOH_00204`	97.0	100.0 / 76.748	Complex
`TkA04G440890`	`LXL04_038541`	`JCVI_TKOH_00204`	99.4	100.0 / 100.0	Strict
`TkA04G441680`	`LXL04_038551`	`JCVI_TKOH_00204`	82.4	100.0 / 90.737	Review
`TkA04G441730`	`LXL04_038552`	`JCVI_TKOH_00204`	69.5	100.0 / 88.353	Review
`TkA04G441770`	`LXL04_038554`	`JCVI_TKOH_00204`	100.0	100.0 / 100.0	Strict
`TkA04G441800`	`LXL04_038555`	`JCVI_TKOH_00204`	99.7	100.0 / 100.0	Strict
`TkA04G441810`	`LXL04_038556`	`JCVI_TKOH_00204`	98.7	100.0 / 100.0	Strict
`TkA04G441820`	`LXL04_038557`	`JCVI_TKOH_00204`	100.0	82.32 / 97.386	Strict
`TkA04G441830`	`LXL04_038558`	`JCVI_TKOH_00204`	100.0	100.0 / 100.0	Strict
`TkA04G441920`	`LXL04_038559`	`JCVI_TKOH_00204`	97.8	100.0 / 100.0	Strict
`TkA04G442080`	`LXL04_038562`	`JCVI_TKOH_00204`	93.9	100.0 / 100.0	Complex
`TkA04G442510`	`LXL04_038564`	`JCVI_TKOH_00204`	97.3	88.554 / 57.647	Review
`TkA04G442650`	`LXL04_038565`	`JCVI_TKOH_00204`	93.7	100.0 / 100.0	Complex
`TkA04G442690`	`LXL04_038566`	`JCVI_TKOH_00204`	99.1	100.0 / 100.0	Strict
`TkA04G442830`	`LXL04_038567`	`JCVI_TKOH_00204`	94.2	77.528 / 100.0	Complex
`TkA04G442840`	`LXL04_038568`	`JCVI_TKOH_00204`	82.1	100.0 / 54.795	Complex
`TkA04G442850`	`LXL04_038568`	`JCVI_TKOH_00204`	98.9	77.686 / 18.395	Complex
`TkA04G443100`	`LXL04_038573`	`JCVI_TKOH_00204`	93.7	100.0 / 100.0	Probable
`TkA04G443110`	`LXL04_038576`	`JCVI_TKOH_00204`	98.8	100.0 / 100.0	Strict
`TkA04G443180`	`LXL04_038577`	`JCVI_TKOH_00204`	99.4	100.0 / 100.0	Strict
`TkA04G443450`	`LXL04_038580`	`JCVI_TKOH_00204`	96.0	100.0 / 100.0	Strict
`TkA04G443890`	`LXL04_038582`	`JCVI_TKOH_00204`	92.4	100.0 / 100.0	Probable
`TkA04G443900`	`LXL04_038583`	`JCVI_TKOH_00204`	98.0	100.0 / 52.613	Review
`TkA04G443980`	`LXL04_038583`	`JCVI_TKOH_00204`	100.0	100.0 / 36.934	Review
`TkA04G444060`	`LXL04_038587`	`JCVI_TKOH_00204`	80.2	95.331 / 73.981	Complex
`TkA04G444240`	`LXL04_038583`	`JCVI_TKOH_00204`	87.1	88.462 / 48.432	Complex
`TkA04G444670`	`LXL04_038590`	`JCVI_TKOH_00204`	95.9	100.0 / 100.0	Strict
`TkA04G445210`	`LXL04_038593`	`JCVI_TKOH_00204`	92.4	100.0 / 80.672	Probable
`TkA04G445490`	`LXL04_038597`	`JCVI_TKOH_00204`	99.1	100.0 / 100.0	Strict
`TkA04G445590`	`LXL04_038599`	`JCVI_TKOH_00204`	99.4	100.0 / 100.0	Review
`TkA04G446030`	`LXL04_038601`	`JCVI_TKOH_00204`	99.9	98.41 / 99.561	Review
`TkA04G446200`	`LXL04_038604`	`JCVI_TKOH_00204`	100.0	100.0 / 100.0	Strict
`TkA04G447920`	`LXL04_038615`	`JCVI_TKOH_00204`	94.9	100.0 / 100.0	Complex