Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00197

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 104

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00197

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00197 Chr04 62546894-70270830 Chr09 454957-7357813 mixed High 104 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00197`	Chr04:62546894-70270830	Chr09:454957-7357813	mixed	104	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 104 · Showing 1–104 · Page 1/1

Download All Anchors TSV

TkA04G248040 → LXL04_037156

92.2%

TkA04G248050 → LXL04_037153

91.5%

TkA04G252860 → LXL04_037153

99.9%

TkA04G252910 → LXL04_037156

100.0%

TkA04G252940 → LXL04_037157

57.6%

TkA04G253080 → LXL04_037160

93.3%

TkA04G253280 → LXL04_037162

100.0%

TkA04G254480 → LXL04_037170

99.6%

TkA04G255120 → LXL04_037172

100.0%

TkA04G255530 → LXL04_037178

100.0%

TkA04G255760 → LXL04_037181

99.7%

TkA04G255780 → LXL04_037182

99.4%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA04G248040`	`LXL04_037156`	`JCVI_TKOH_00197`	92.2	100.0 / 25.978	Complex
`TkA04G248050`	`LXL04_037153`	`JCVI_TKOH_00197`	91.5	97.027 / 44.517	Complex
`TkA04G252860`	`LXL04_037153`	`JCVI_TKOH_00197`	99.9	98.419 / 54.337	Review
`TkA04G252910`	`LXL04_037156`	`JCVI_TKOH_00197`	100.0	100.0 / 25.978	Review
`TkA04G252940`	`LXL04_037157`	`JCVI_TKOH_00197`	57.6	80.856 / 98.947	Complex
`TkA04G253080`	`LXL04_037160`	`JCVI_TKOH_00197`	93.3	99.774 / 72.214	Review
`TkA04G253280`	`LXL04_037162`	`JCVI_TKOH_00197`	100.0	84.828 / 58.294	Complex
`TkA04G254480`	`LXL04_037170`	`JCVI_TKOH_00197`	99.6	99.209 / 89.007	Strict
`TkA04G255120`	`LXL04_037172`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G255530`	`LXL04_037178`	`JCVI_TKOH_00197`	100.0	97.075 / 75.108	Complex
`TkA04G255760`	`LXL04_037181`	`JCVI_TKOH_00197`	99.7	100.0 / 95.252	Strict
`TkA04G255780`	`LXL04_037182`	`JCVI_TKOH_00197`	99.4	100.0 / 52.492	Review
`TkA04G256130`	`LXL04_037183`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G256370`	`LXL04_037184`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G257290`	`LXL04_037193`	`JCVI_TKOH_00197`	61.0	100.0 / 100.0	Complex
`TkA04G257500`	`LXL04_037192`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Review
`TkA04G258590`	`LXL04_037227`	`JCVI_TKOH_00197`	86.2	92.199 / 45.016	Review
`TkA04G258710`	`LXL04_037225`	`JCVI_TKOH_00197`	95.6	88.35 / 34.866	Review
`TkA04G258850`	`LXL04_037223`	`JCVI_TKOH_00197`	99.4	100.0 / 100.0	Strict
`TkA04G258970`	`LXL04_037222`	`JCVI_TKOH_00197`	99.7	100.0 / 94.72	Strict
`TkA04G258980`	`LXL04_037221`	`JCVI_TKOH_00197`	99.7	100.0 / 100.0	Strict
`TkA04G259110`	`LXL04_037220`	`JCVI_TKOH_00197`	100.0	100.0 / 59.624	Review
`TkA04G260080`	`LXL04_037219`	`JCVI_TKOH_00197`	99.0	100.0 / 100.0	Complex
`TkA04G260260`	`LXL04_037218`	`JCVI_TKOH_00197`	99.0	98.992 / 100.0	Complex
`TkA04G260270`	`LXL04_037217`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G260340`	`LXL04_037215`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Complex
`TkA04G260370`	`LXL04_037214`	`JCVI_TKOH_00197`	90.2	100.0 / 34.539	Complex
`TkA04G260590`	`LXL04_037213`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G261180`	`LXL04_037209`	`JCVI_TKOH_00197`	90.4	100.0 / 100.0	Complex
`TkA04G262700`	`LXL04_037233`	`JCVI_TKOH_00197`	99.3	96.563 / 56.418	Review
`TkA04G262770`	`LXL04_037234`	`JCVI_TKOH_00197`	97.1	81.065 / 69.347	Review
`TkA04G262780`	`LXL04_037235`	`JCVI_TKOH_00197`	100.0	94.262 / 10.379	Review
`TkA04G262850`	`LXL04_037236`	`JCVI_TKOH_00197`	99.6	98.333 / 48.065	Review
`TkA04G262920`	`LXL04_037237`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G262950`	`LXL04_037238`	`JCVI_TKOH_00197`	99.4	90.86 / 51.682	Review
`TkA04G263020`	`LXL04_037240`	`JCVI_TKOH_00197`	99.4	99.444 / 70.302	Probable
`TkA04G263740`	`LXL04_037242`	`JCVI_TKOH_00197`	98.1	100.0 / 86.25	Complex
`TkA04G263960`	`LXL04_037243`	`JCVI_TKOH_00197`	100.0	98.734 / 86.667	Complex
`TkA04G263990`	`LXL04_037244`	`JCVI_TKOH_00197`	99.6	100.0 / 100.0	Strict
`TkA04G264000`	`LXL04_037245`	`JCVI_TKOH_00197`	79.2	100.0 / 100.0	Review
`TkA04G264090`	`LXL04_037246`	`JCVI_TKOH_00197`	99.2	92.621 / 77.944	Probable
`TkA04G264100`	`LXL04_037248`	`JCVI_TKOH_00197`	99.1	100.0 / 51.584	Review
`TkA04G264110`	`LXL04_037248`	`JCVI_TKOH_00197`	99.5	92.06 / 48.529	Review
`TkA04G264130`	`LXL04_037250`	`JCVI_TKOH_00197`	99.7	100.0 / 62.635	Review
`TkA04G264590`	`LXL04_037255`	`JCVI_TKOH_00197`	99.5	100.0 / 91.096	Strict
`TkA04G264600`	`LXL04_037257`	`JCVI_TKOH_00197`	99.7	100.0 / 100.0	Strict
`TkA04G264610`	`LXL04_037258`	`JCVI_TKOH_00197`	99.3	100.0 / 22.309	Review
`TkA04G264740`	`LXL04_037258`	`JCVI_TKOH_00197`	93.9	100.0 / 53.354	Complex
`TkA04G264750`	`LXL04_037259`	`JCVI_TKOH_00197`	98.3	100.0 / 95.752	Strict
`TkA04G264780`	`LXL04_037258`	`JCVI_TKOH_00197`	55.5	90.578 / 49.766	Complex
`TkA04G265470`	`LXL04_037260`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Review
`TkA04G265480`	`LXL04_037258`	`JCVI_TKOH_00197`	63.8	100.0 / 52.886	Complex
`TkA04G266420`	`LXL04_037264`	`JCVI_TKOH_00197`	99.4	100.0 / 100.0	Complex
`TkA04G266460`	`LXL04_037267`	`JCVI_TKOH_00197`	99.6	99.816 / 65.066	Complex
`TkA04G266470`	`LXL04_037267`	`JCVI_TKOH_00197`	100.0	100.0 / 12.485	Review
`TkA04G266480`	`LXL04_037268`	`JCVI_TKOH_00197`	99.5	100.0 / 100.0	Complex
`TkA04G266490`	`LXL04_037269`	`JCVI_TKOH_00197`	99.4	100.0 / 100.0	Complex
`TkA04G266760`	`LXL04_037270`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Complex
`TkA04G266970`	`LXL04_037267`	`JCVI_TKOH_00197`	100.0	90.123 / 17.527	Review
`TkA04G267150`	`LXL04_037264`	`JCVI_TKOH_00197`	91.8	97.115 / 91.877	Complex
`TkA04G267310`	`LXL04_037275`	`JCVI_TKOH_00197`	85.1	100.0 / 100.0	Review
`TkA04G267320`	`LXL04_037276`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G267340`	`LXL04_037277`	`JCVI_TKOH_00197`	97.4	99.314 / 90.665	Strict
`TkA04G267350`	`LXL04_037278`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G267360`	`LXL04_037279`	`JCVI_TKOH_00197`	99.7	100.0 / 100.0	Complex
`TkA04G267480`	`LXL04_037280`	`JCVI_TKOH_00197`	99.6	99.175 / 51.609	Review
`TkA04G267520`	`LXL04_037280`	`JCVI_TKOH_00197`	99.7	100.0 / 35.944	Review
`TkA04G268080`	`LXL04_037286`	`JCVI_TKOH_00197`	99.8	99.62 / 99.431	Complex
`TkA04G268570`	`LXL04_037290`	`JCVI_TKOH_00197`	100.0	100.0 / 91.667	Complex
`TkA04G268630`	`LXL04_037291`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Complex
`TkA04G268640`	`LXL04_037292`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Complex
`TkA04G268650`	`LXL04_037293`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Review
`TkA04G268820`	`LXL04_037294`	`JCVI_TKOH_00197`	93.9	100.0 / 94.69	Complex
`TkA04G269890`	`LXL04_037296`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Review
`TkA04G269900`	`LXL04_037297`	`JCVI_TKOH_00197`	96.5	100.0 / 100.0	Review
`TkA04G269910`	`LXL04_037298`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Review
`TkA04G269930`	`LXL04_037299`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Complex
`TkA04G269940`	`LXL04_037300`	`JCVI_TKOH_00197`	94.2	100.0 / 100.0	Review
`TkA04G269960`	`LXL04_037301`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Review
`TkA04G270640`	`LXL04_037310`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G270680`	`LXL04_037311`	`JCVI_TKOH_00197`	99.6	100.0 / 100.0	Strict
`TkA04G271450`	`LXL04_037313`	`JCVI_TKOH_00197`	99.7	100.0 / 100.0	Strict
`TkA04G271820`	`LXL04_037315`	`JCVI_TKOH_00197`	81.3	93.958 / 19.431	Complex
`TkA04G271960`	`LXL04_037317`	`JCVI_TKOH_00197`	81.4	98.214 / 37.524	Review
`TkA04G271970`	`LXL04_037319`	`JCVI_TKOH_00197`	99.4	100.0 / 100.0	Strict
`TkA04G271990`	`LXL04_037321`	`JCVI_TKOH_00197`	99.1	96.491 / 82.707	Strict
`TkA04G272180`	`LXL04_037322`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G272190`	`LXL04_037323`	`JCVI_TKOH_00197`	100.0	100.0 / 85.124	Review
`TkA04G272610`	`LXL04_037326`	`JCVI_TKOH_00197`	97.9	100.0 / 100.0	Complex
`TkA04G272710`	`LXL04_037327`	`JCVI_TKOH_00197`	98.7	100.0 / 100.0	Strict
`TkA04G273180`	`LXL04_037328`	`JCVI_TKOH_00197`	84.5	100.0 / 100.0	Review
`TkA04G273380`	`LXL04_037330`	`JCVI_TKOH_00197`	99.2	91.608 / 34.565	Review
`TkA04G273390`	`LXL04_037331`	`JCVI_TKOH_00197`	81.8	100.0 / 100.0	Review
`TkA04G273610`	`LXL04_037333`	`JCVI_TKOH_00197`	100.0	100.0 / 100.0	Strict
`TkA04G273810`	`LXL04_037338`	`JCVI_TKOH_00197`	82.3	100.0 / 27.941	Complex
`TkA04G273850`	`LXL04_037339`	`JCVI_TKOH_00197`	99.4	100.0 / 100.0	Strict
`TkA04G274080`	`LXL04_037338`	`JCVI_TKOH_00197`	100.0	94.118 / 12.834	Review
`TkA04G274420`	`LXL04_037342`	`JCVI_TKOH_00197`	96.0	97.087 / 90.909	Strict
`TkA04G275910`	`LXL04_037356`	`JCVI_TKOH_00197`	96.9	97.03 / 50.0	Review
`TkA04G276080`	`LXL04_037355`	`JCVI_TKOH_00197`	100.0	99.074 / 77.256	Probable
`TkA04G276140`	`LXL04_037353`	`JCVI_TKOH_00197`	93.7	100.0 / 100.0	Probable
`TkA04G276160`	`LXL04_037352`	`JCVI_TKOH_00197`	97.6	70.435 / 64.844	Review
`TkA04G276510`	`LXL04_037351`	`JCVI_TKOH_00197`	97.7	100.0 / 100.0	Review
`TkA04G277530`	`LXL04_037350`	`JCVI_TKOH_00197`	100.0	79.085 / 27.816	Review