Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00009
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 186
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00009

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00009 Chr01 23195726-32797027 Chr01 142135825-151399857 mixed High 186 anchors
Chr01 23195726-32797027 Chr01 142135825-151399857 JCVI_TKOH_00009 · 186 gene pairs TkA01G091630 | LXL04_004952 | 98.2% | multi_source_to_OH1004 | Complex TkA01G091950 | LXL04_004954 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA01G092270 | LXL04_004975 | 78.5% | multi_source_to_OH1004 | Complex TkA01G092600 | LXL04_004973 | 100.0% | non_reciprocal_best_hit | Complex TkA01G092610 | LXL04_004973 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA01G092770 | LXL04_004971 | 100.0% | RBH_high_identity_coverage_synteny | Strict TkA01G092910 | LXL04_004968 | 98.9% | multi_source_to_OH1004 | Complex TkA01G092930 | LXL04_004966 | 99.8% | RBH_high_identity_coverage_synteny | Strict TkA01G093030 | LXL04_004965 | 100.0% | sequence_supported_annotation_or_model_conflict | Review TkA01G093210 | LXL04_004964 | 99.2% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA01G093230 | LXL04_004963 | 95.7% | sequence_supported_annotation_or_model_conflict | Review TkA01G093240 | LXL04_004963 | 97.2% | sequence_supported_annotation_or_model_conflict | Review
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00009 Chr01:23195726-32797027 Chr01:142135825-151399857 mixed 186 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 186 · Showing 1–186 · Page 1/1

TkA01G091630 → LXL04_004952
98.2%
TkA01G091950 → LXL04_004954
100.0%
TkA01G092270 → LXL04_004975
78.5%
TkA01G092600 → LXL04_004973
100.0%
TkA01G092610 → LXL04_004973
100.0%
TkA01G092770 → LXL04_004971
100.0%
TkA01G092910 → LXL04_004968
98.9%
TkA01G092930 → LXL04_004966
99.8%
TkA01G093030 → LXL04_004965
100.0%
TkA01G093210 → LXL04_004964
99.2%
TkA01G093230 → LXL04_004963
95.7%
TkA01G093240 → LXL04_004963
97.2%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA01G091630LXL04_004952JCVI_TKOH_0000998.291.935 / 75.335Complex
TkA01G091950LXL04_004954JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G092270LXL04_004975JCVI_TKOH_0000978.597.772 / 78.824Complex
TkA01G092600LXL04_004973JCVI_TKOH_00009100.083.75 / 26.447Complex
TkA01G092610LXL04_004973JCVI_TKOH_00009100.096.234 / 30.263Review
TkA01G092770LXL04_004971JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G092910LXL04_004968JCVI_TKOH_0000998.9100.0 / 98.921Complex
TkA01G092930LXL04_004966JCVI_TKOH_0000999.8100.0 / 100.0Strict
TkA01G093030LXL04_004965JCVI_TKOH_00009100.0100.0 / 92.92Review
TkA01G093210LXL04_004964JCVI_TKOH_0000999.264.508 / 57.11Review
TkA01G093230LXL04_004963JCVI_TKOH_0000995.797.041 / 30.147Review
TkA01G093240LXL04_004963JCVI_TKOH_0000997.2100.0 / 58.088Review
TkA01G093370LXL04_004962JCVI_TKOH_0000980.277.143 / 14.109Complex
TkA01G093470LXL04_004961JCVI_TKOH_00009100.0100.0 / 100.0Complex
TkA01G093570LXL04_004959JCVI_TKOH_0000994.7100.0 / 61.297Review
TkA01G093660LXL04_004956JCVI_TKOH_0000997.998.969 / 73.282Probable
TkA01G093700LXL04_004955JCVI_TKOH_0000998.496.154 / 93.985Strict
TkA01G094600LXL04_004952JCVI_TKOH_0000999.696.558 / 96.558Complex
TkA01G094620LXL04_004951JCVI_TKOH_0000997.3100.0 / 100.0Complex
TkA01G094770LXL04_004950JCVI_TKOH_00009100.093.043 / 32.326Review
TkA01G094780LXL04_004950JCVI_TKOH_0000999.177.551 / 34.441Review
TkA01G094790LXL04_004949JCVI_TKOH_0000994.4100.0 / 100.0Probable
TkA01G094890LXL04_004947JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G094940LXL04_004945JCVI_TKOH_00009100.0100.0 / 100.0Review
TkA01G094960LXL04_004944JCVI_TKOH_0000994.6100.0 / 100.0Probable
TkA01G094980LXL04_004943JCVI_TKOH_0000999.5100.0 / 100.0Complex
TkA01G094990LXL04_004942JCVI_TKOH_0000999.7100.0 / 100.0Strict
TkA01G095000LXL04_004941JCVI_TKOH_0000999.8100.0 / 100.0Strict
TkA01G095270LXL04_004939JCVI_TKOH_0000999.4100.0 / 100.0Strict
TkA01G095430LXL04_004935JCVI_TKOH_0000989.731.2 / 9.645Complex
TkA01G095590LXL04_004933JCVI_TKOH_0000994.078.505 / 66.39Complex
TkA01G096160LXL04_004931JCVI_TKOH_0000991.1100.0 / 100.0Probable
TkA01G096770LXL04_004922JCVI_TKOH_0000991.2100.0 / 100.0Complex
TkA01G096950LXL04_004922JCVI_TKOH_0000976.590.681 / 40.31Complex
TkA01G097100LXL04_004917JCVI_TKOH_0000999.6100.0 / 69.841Review
TkA01G097910LXL04_004915JCVI_TKOH_0000990.5100.0 / 96.699Probable
TkA01G097940LXL04_004913JCVI_TKOH_0000998.8100.0 / 92.541Complex
TkA01G097950LXL04_004912JCVI_TKOH_0000979.2100.0 / 100.0Complex
TkA01G098060LXL04_004911JCVI_TKOH_00009100.024.528 / 30.952Review
TkA01G098070LXL04_004910JCVI_TKOH_0000995.0100.0 / 100.0Complex
TkA01G098140LXL04_004907JCVI_TKOH_0000999.8100.0 / 100.0Strict
TkA01G098200LXL04_004904JCVI_TKOH_0000997.696.222 / 49.935Review
TkA01G098220LXL04_004903JCVI_TKOH_0000998.2100.0 / 100.0Complex
TkA01G098250LXL04_004902JCVI_TKOH_0000998.585.443 / 30.134Review
TkA01G098260LXL04_004900JCVI_TKOH_00009100.0100.0 / 100.0Complex
TkA01G098470LXL04_004897JCVI_TKOH_0000996.9100.0 / 100.0Review
TkA01G098700LXL04_004896JCVI_TKOH_00009100.0100.0 / 88.525Strict
TkA01G098720LXL04_004895JCVI_TKOH_0000999.599.533 / 98.611Strict
TkA01G098770LXL04_004894JCVI_TKOH_0000998.9100.0 / 100.0Strict
TkA01G098780LXL04_004893JCVI_TKOH_00009100.095.161 / 38.816Review
TkA01G098840LXL04_004892JCVI_TKOH_0000991.9100.0 / 100.0Probable
TkA01G098860LXL04_004891JCVI_TKOH_0000994.890.654 / 35.531Review
TkA01G098870LXL04_004891JCVI_TKOH_0000980.167.105 / 27.839Complex
TkA01G098900LXL04_004890JCVI_TKOH_0000999.3100.0 / 100.0Strict
TkA01G098920LXL04_004889JCVI_TKOH_0000998.098.371 / 52.705Review
TkA01G099290LXL04_004887JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G099350LXL04_004886JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G099800LXL04_004885JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G099850LXL04_004883JCVI_TKOH_0000999.7100.0 / 100.0Strict
TkA01G100000LXL04_004881JCVI_TKOH_0000999.2100.0 / 100.0Complex
TkA01G100320LXL04_004880JCVI_TKOH_00009100.0100.0 / 60.0Review
TkA01G100340LXL04_004879JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G100350LXL04_004878JCVI_TKOH_0000999.4100.0 / 100.0Strict
TkA01G100480LXL04_004876JCVI_TKOH_0000999.3100.0 / 100.0Strict
TkA01G100490LXL04_004875JCVI_TKOH_0000999.8100.0 / 100.0Strict
TkA01G100660LXL04_004871JCVI_TKOH_0000999.4100.0 / 100.0Complex
TkA01G100670LXL04_004870JCVI_TKOH_0000998.166.25 / 69.281Review
TkA01G100680LXL04_004869JCVI_TKOH_00009100.0100.0 / 100.0Review
TkA01G100770LXL04_004867JCVI_TKOH_0000998.8100.0 / 100.0Strict
TkA01G100780LXL04_004866JCVI_TKOH_0000995.7100.0 / 100.0Strict
TkA01G101110LXL04_004857JCVI_TKOH_0000998.599.835 / 77.497Probable
TkA01G101170LXL04_004855JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G101190LXL04_004854JCVI_TKOH_0000998.560.443 / 66.897Complex
TkA01G101230LXL04_004852JCVI_TKOH_0000999.4100.0 / 100.0Complex
TkA01G101260LXL04_004851JCVI_TKOH_0000999.296.875 / 20.777Review
TkA01G101290LXL04_004850JCVI_TKOH_0000998.748.077 / 36.946Review
TkA01G101700LXL04_004847JCVI_TKOH_0000989.876.596 / 48.869Review
TkA01G101710LXL04_004846JCVI_TKOH_0000995.788.535 / 51.292Review
TkA01G101720LXL04_004845JCVI_TKOH_0000961.2100.0 / 23.105Review
TkA01G101790LXL04_004844JCVI_TKOH_00009100.087.879 / 89.231Complex
TkA01G102150LXL04_004843JCVI_TKOH_0000999.486.598 / 74.336Probable
TkA01G102400LXL04_004842JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G102410LXL04_004841JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G102420LXL04_004840JCVI_TKOH_0000999.4100.0 / 100.0Strict
TkA01G102630LXL04_004836JCVI_TKOH_0000986.785.095 / 65.465Complex
TkA01G102670LXL04_004835JCVI_TKOH_0000998.8100.0 / 100.0Strict
TkA01G102730LXL04_004834JCVI_TKOH_0000998.886.559 / 47.774Review
TkA01G102850LXL04_004836JCVI_TKOH_0000986.198.438 / 65.655Complex
TkA01G102890LXL04_004834JCVI_TKOH_00009100.091.765 / 92.582Strict
TkA01G102910LXL04_004833JCVI_TKOH_0000988.198.491 / 81.832Review
TkA01G103080LXL04_004831JCVI_TKOH_0000999.4100.0 / 100.0Strict
TkA01G103380LXL04_004829JCVI_TKOH_0000999.1100.0 / 100.0Strict
TkA01G103400LXL04_004828JCVI_TKOH_00009100.098.256 / 81.84Strict
TkA01G105040LXL04_004825JCVI_TKOH_0000999.6100.0 / 100.0Strict
TkA01G105050LXL04_004824JCVI_TKOH_0000999.7100.0 / 100.0Strict
TkA01G107400LXL04_004818JCVI_TKOH_0000998.6100.0 / 100.0Complex
TkA01G108990LXL04_004814JCVI_TKOH_00009100.0100.0 / 56.481Review
TkA01G109180LXL04_004813JCVI_TKOH_0000999.685.948 / 100.0Review
TkA01G109400LXL04_004811JCVI_TKOH_0000998.5100.0 / 100.0Strict
TkA01G109420LXL04_004808JCVI_TKOH_00009100.082.051 / 25.634Complex
TkA01G109620LXL04_004807JCVI_TKOH_0000999.161.853 / 11.973Complex
TkA01G109690LXL04_004805JCVI_TKOH_00009100.0100.0 / 100.0Complex
TkA01G109940LXL04_004801JCVI_TKOH_0000999.396.203 / 100.0Complex
TkA01G110030LXL04_004800JCVI_TKOH_00009100.0100.0 / 53.953Review
TkA01G110090LXL04_004799JCVI_TKOH_0000991.8100.0 / 80.739Probable
TkA01G110390LXL04_004789JCVI_TKOH_0000989.659.503 / 76.768Review
TkA01G110860LXL04_004790JCVI_TKOH_0000985.761.446 / 46.281Complex
TkA01G110880LXL04_004791JCVI_TKOH_00009100.0100.0 / 100.0Review
TkA01G110930LXL04_004792JCVI_TKOH_0000993.2100.0 / 100.0Probable
TkA01G111060LXL04_004793JCVI_TKOH_00009100.0100.0 / 100.0Review
TkA01G111110LXL04_004795JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G111870LXL04_004796JCVI_TKOH_00009100.0100.0 / 64.681Complex
TkA01G112320LXL04_004798JCVI_TKOH_0000996.9100.0 / 96.018Complex
TkA01G112440LXL04_004765JCVI_TKOH_0000994.2100.0 / 100.0Probable
TkA01G112480LXL04_004766JCVI_TKOH_00009100.099.248 / 49.254Review
TkA01G112820LXL04_004770JCVI_TKOH_00009100.0100.0 / 100.0Complex
TkA01G112890LXL04_004771JCVI_TKOH_0000992.396.019 / 52.478Complex
TkA01G112910LXL04_004772JCVI_TKOH_00009100.090.705 / 79.944Probable
TkA01G112950LXL04_004773JCVI_TKOH_00009100.096.748 / 45.076Review
TkA01G113090LXL04_004774JCVI_TKOH_0000997.9100.0 / 100.0Strict
TkA01G113100LXL04_004775JCVI_TKOH_0000996.098.764 / 98.599Strict
TkA01G115070LXL04_004756JCVI_TKOH_00009100.0100.0 / 100.0Review
TkA01G115460LXL04_004754JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G115710LXL04_004752JCVI_TKOH_00009100.0100.0 / 70.093Probable
TkA01G115810LXL04_004751JCVI_TKOH_0000999.0100.0 / 100.0Strict
TkA01G115830LXL04_004750JCVI_TKOH_0000997.6100.0 / 69.9Review
TkA01G115920LXL04_004748JCVI_TKOH_0000999.4100.0 / 100.0Strict
TkA01G116200LXL04_004745JCVI_TKOH_0000993.794.983 / 82.405Probable
TkA01G116260LXL04_004744JCVI_TKOH_0000975.1100.0 / 100.0Review
TkA01G116280LXL04_004743JCVI_TKOH_00009100.0100.0 / 100.0Review
TkA01G116310LXL04_004742JCVI_TKOH_0000999.7100.0 / 100.0Strict
TkA01G116330LXL04_004741JCVI_TKOH_0000998.1100.0 / 100.0Complex
TkA01G116610LXL04_004740JCVI_TKOH_0000985.0100.0 / 90.535Review
TkA01G116820LXL04_004740JCVI_TKOH_00009100.088.889 / 49.383Review
TkA01G117290LXL04_004737JCVI_TKOH_0000998.7100.0 / 96.875Complex
TkA01G117350LXL04_004736JCVI_TKOH_0000995.0100.0 / 100.0Strict
TkA01G117400LXL04_004735JCVI_TKOH_0000998.6100.0 / 100.0Strict
TkA01G117460LXL04_004734JCVI_TKOH_0000999.5100.0 / 100.0Complex
TkA01G118030LXL04_004728JCVI_TKOH_0000981.866.148 / 85.789Complex
TkA01G118100LXL04_004731JCVI_TKOH_0000994.9100.0 / 89.216Probable
TkA01G118110LXL04_004728JCVI_TKOH_0000988.4100.0 / 95.789Complex
TkA01G118120LXL04_004727JCVI_TKOH_00009100.0100.0 / 80.074Strict
TkA01G118180LXL04_004725JCVI_TKOH_0000993.8100.0 / 100.0Probable
TkA01G118390LXL04_004723JCVI_TKOH_00009100.0100.0 / 100.0Complex
TkA01G118400LXL04_004721JCVI_TKOH_0000999.6100.0 / 100.0Complex
TkA01G118410LXL04_004720JCVI_TKOH_0000999.6100.0 / 100.0Strict
TkA01G118420LXL04_004719JCVI_TKOH_0000999.5100.0 / 100.0Complex
TkA01G118430LXL04_004718JCVI_TKOH_0000994.0100.0 / 100.0Probable
TkA01G118620LXL04_004717JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G119390LXL04_004712JCVI_TKOH_0000998.079.2 / 12.532Complex
TkA01G119700LXL04_004711JCVI_TKOH_0000999.295.652 / 83.544Review
TkA01G119880LXL04_004708JCVI_TKOH_0000999.3100.0 / 67.822Review
TkA01G119890LXL04_004707JCVI_TKOH_0000999.2100.0 / 100.0Complex
TkA01G120600LXL04_004707JCVI_TKOH_0000984.2100.0 / 100.0Complex
TkA01G120640LXL04_004705JCVI_TKOH_0000998.2100.0 / 100.0Strict
TkA01G121250LXL04_004704JCVI_TKOH_00009100.099.288 / 83.533Strict
TkA01G121330LXL04_004703JCVI_TKOH_0000997.9100.0 / 100.0Strict
TkA01G121450LXL04_004699JCVI_TKOH_0000999.5100.0 / 100.0Complex
TkA01G121480LXL04_004698JCVI_TKOH_0000999.0100.0 / 100.0Strict
TkA01G121490LXL04_004696JCVI_TKOH_0000996.9100.0 / 100.0Strict
TkA01G121510LXL04_004695JCVI_TKOH_00009100.0100.0 / 77.394Complex
TkA01G121750LXL04_004694JCVI_TKOH_00009100.0100.0 / 100.0Complex
TkA01G122070LXL04_004690JCVI_TKOH_0000996.1100.0 / 96.455Complex
TkA01G122430LXL04_004689JCVI_TKOH_0000985.599.281 / 91.391Review
TkA01G122460LXL04_004688JCVI_TKOH_0000998.1100.0 / 100.0Strict
TkA01G124810LXL04_004686JCVI_TKOH_0000999.3100.0 / 100.0Strict
TkA01G125090LXL04_004684JCVI_TKOH_0000997.7100.0 / 100.0Strict
TkA01G125100LXL04_004683JCVI_TKOH_0000988.198.785 / 59.834Complex
TkA01G125410LXL04_004682JCVI_TKOH_0000974.6100.0 / 93.471Complex
TkA01G125480LXL04_004676JCVI_TKOH_0000998.8100.0 / 72.978Probable
TkA01G126370LXL04_004666JCVI_TKOH_0000999.6100.0 / 55.285Review
TkA01G127030LXL04_004664JCVI_TKOH_0000997.177.465 / 97.865Probable
TkA01G127600LXL04_004662JCVI_TKOH_0000968.8100.0 / 82.222Complex
TkA01G128180LXL04_004657JCVI_TKOH_0000978.5100.0 / 73.572Review
TkA01G128460LXL04_004657JCVI_TKOH_0000967.895.276 / 15.936Complex
TkA01G128550LXL04_004655JCVI_TKOH_0000999.1100.0 / 100.0Strict
TkA01G128570LXL04_004652JCVI_TKOH_0000998.298.932 / 96.864Strict
TkA01G128580LXL04_004651JCVI_TKOH_00009100.0100.0 / 94.215Strict
TkA01G128710LXL04_004648JCVI_TKOH_0000991.075.0 / 12.48Complex
TkA01G128770LXL04_004646JCVI_TKOH_0000995.992.116 / 37.691Review
TkA01G128910LXL04_004644JCVI_TKOH_00009100.0100.0 / 100.0Strict
TkA01G129040LXL04_004643JCVI_TKOH_0000994.8100.0 / 100.0Probable
TkA01G129340LXL04_004640JCVI_TKOH_0000999.599.537 / 99.768Complex
TkA01G129360LXL04_004639JCVI_TKOH_0000999.7100.0 / 100.0Review
TkA01G129770LXL04_004638JCVI_TKOH_0000999.6100.0 / 89.655Strict
TkA01G129910LXL04_004639JCVI_TKOH_0000999.7100.0 / 100.0Review