Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
TkA01G624900
Matched alias: TkA01G624900
Query type
Gene ID
Crosswalk plus synteny evidence
Resolved gene
TkA01G624900
TK1151 · GWHBCHF00000002:157738653-157741276 (-)
Linked evidence
2 / 1 / 496
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00037

The query resolves to a rubber dandelion gene. Gene-level crosswalk is shown first, followed by block and anchor evidence.

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00037 Chr01 147269835-162524362 Chr01 135159-15099463 mixed High 200 anchors
Chr01 147269835-162524362 Chr01 135159-15099463 JCVI_TKOH_00037 · 496 gene pairs TkA01G585570 | LXL04_000815 | 96.3% | RBH_high_identity_coverage_synteny | Strict TkA01G585590 | LXL04_000814 | 98.9% | multi_source_to_OH1004 | Complex TkA01G585640 | LXL04_000813 | 98.2% | sequence_supported_annotation_or_model_conflict | Review TkA01G585760 | LXL04_000811 | 99.6% | multi_source_to_OH1004 | Complex TkA01G585770 | LXL04_000810 | 97.4% | RBH_high_identity_coverage_synteny | Strict TkA01G586280 | LXL04_000808 | 95.0% | sequence_supported_annotation_or_model_conflict | Review TkA01G586520 | LXL04_000808 | 82.4% | RBH_below_probable_coverage_or_synteny_threshold | Review TkA01G586540 | LXL04_000808 | 79.7% | non_reciprocal_best_hit | Complex TkA01G586550 | LXL04_000804 | 99.0% | RBH_high_identity_coverage_synteny | Strict TkA01G586560 | LXL04_000800 | 97.4% | RBH_high_identity_coverage_synteny | Strict TkA01G586740 | LXL04_000799 | 98.6% | sequence_supported_annotation_or_model_conflict | Review TkA01G586780 | LXL04_000798 | 99.4% | RBH_high_identity_coverage_synteny | Strict
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

InputQuery geneTarget geneBlockIdentityCoverageRBHConfidence
TkA01G624900 LXL04_000258
OH1004 Chr01:4829778-4832930
TkA01G624900
TK1151 Chr01:157738653-157741276
JCVI_TKOH_00037 99.8 96.737 / 100.0 1 Complex
TkA01G624900 TkA01G624900
TK1151 Chr01:157738653-157741276
LXL04_000258
OH1004 Chr01:4829778-4832930
JCVI_TKOH_00037 99.8 100.0 / 96.737 1 Complex

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00037 Chr01:147269835-162524362 Chr01:135159-15099463 mixed 496 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 496 · Showing 1–200 · Page 1/3

TkA01G585570 → LXL04_000815
96.3%
TkA01G585590 → LXL04_000814
98.9%
TkA01G585640 → LXL04_000813
98.2%
TkA01G585760 → LXL04_000811
99.6%
TkA01G585770 → LXL04_000810
97.4%
TkA01G586280 → LXL04_000808
95.0%
TkA01G586520 → LXL04_000808
82.4%
TkA01G586540 → LXL04_000808
79.7%
TkA01G586550 → LXL04_000804
99.0%
TkA01G586560 → LXL04_000800
97.4%
TkA01G586740 → LXL04_000799
98.6%
TkA01G586780 → LXL04_000798
99.4%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA01G585570LXL04_000815JCVI_TKOH_0003796.3100.0 / 100.0Strict
TkA01G585590LXL04_000814JCVI_TKOH_0003798.9100.0 / 100.0Complex
TkA01G585640LXL04_000813JCVI_TKOH_0003798.2100.0 / 55.122Review
TkA01G585760LXL04_000811JCVI_TKOH_0003799.6100.0 / 100.0Complex
TkA01G585770LXL04_000810JCVI_TKOH_0003797.4100.0 / 100.0Strict
TkA01G586280LXL04_000808JCVI_TKOH_0003795.099.315 / 36.797Review
TkA01G586520LXL04_000808JCVI_TKOH_0003782.495.466 / 52.445Review
TkA01G586540LXL04_000808JCVI_TKOH_0003779.798.777 / 40.954Complex
TkA01G586550LXL04_000804JCVI_TKOH_0003799.0100.0 / 100.0Strict
TkA01G586560LXL04_000800JCVI_TKOH_0003797.499.36 / 89.615Strict
TkA01G586740LXL04_000799JCVI_TKOH_0003798.6100.0 / 50.347Review
TkA01G586780LXL04_000798JCVI_TKOH_0003799.4100.0 / 100.0Strict
TkA01G587140LXL04_000796JCVI_TKOH_0003761.5100.0 / 100.0Complex
TkA01G587830LXL04_000795JCVI_TKOH_0003795.7100.0 / 100.0Strict
TkA01G588180LXL04_000789JCVI_TKOH_0003792.9100.0 / 100.0Probable
TkA01G588220LXL04_000788JCVI_TKOH_00037100.0100.0 / 100.0Strict
TkA01G588260LXL04_000787JCVI_TKOH_00037100.076.487 / 76.487Probable
TkA01G588280LXL04_000786JCVI_TKOH_0003799.4100.0 / 100.0Complex
TkA01G588310LXL04_000785JCVI_TKOH_0003793.597.49 / 51.464Review
TkA01G588390LXL04_000784JCVI_TKOH_0003799.798.489 / 99.694Strict
TkA01G588510LXL04_000782JCVI_TKOH_0003798.7100.0 / 100.0Strict
TkA01G588520LXL04_000781JCVI_TKOH_0003799.0100.0 / 100.0Strict
TkA01G588530LXL04_000780JCVI_TKOH_00037100.0100.0 / 100.0Review
TkA01G588800LXL04_000766JCVI_TKOH_0003799.2100.0 / 100.0Complex
TkA01G588860LXL04_000767JCVI_TKOH_00037100.0100.0 / 100.0Review
TkA01G588870LXL04_000768JCVI_TKOH_00037100.0100.0 / 100.0Review
TkA01G588880LXL04_000769JCVI_TKOH_0003789.058.491 / 77.519Complex
TkA01G588900LXL04_000770JCVI_TKOH_0003793.3100.0 / 100.0Complex
TkA01G588910LXL04_000771JCVI_TKOH_00037100.0100.0 / 100.0Complex
TkA01G588920LXL04_000772JCVI_TKOH_0003796.9100.0 / 100.0Complex
TkA01G588990LXL04_000772JCVI_TKOH_0003794.399.554 / 51.236Complex
TkA01G589060LXL04_000776JCVI_TKOH_0003799.592.724 / 98.561Strict
TkA01G589080LXL04_000775JCVI_TKOH_0003799.8100.0 / 100.0Complex
TkA01G589300LXL04_000774JCVI_TKOH_0003799.895.528 / 36.892Review
TkA01G589320LXL04_000775JCVI_TKOH_0003772.5100.0 / 100.0Complex
TkA01G589330LXL04_000773JCVI_TKOH_0003799.141.923 / 30.278Complex
TkA01G589380LXL04_000772JCVI_TKOH_0003799.3100.0 / 100.0Complex
TkA01G589390LXL04_000771JCVI_TKOH_0003797.7100.0 / 100.0Complex
TkA01G589400LXL04_000770JCVI_TKOH_0003794.8100.0 / 100.0Complex
TkA01G589430LXL04_000769JCVI_TKOH_0003797.062.893 / 77.519Complex
TkA01G589440LXL04_000768JCVI_TKOH_00037100.0100.0 / 100.0Review
TkA01G589450LXL04_000767JCVI_TKOH_00037100.0100.0 / 100.0Review
TkA01G589510LXL04_000766JCVI_TKOH_00037100.0100.0 / 100.0Complex
TkA01G589530LXL04_000765JCVI_TKOH_0003799.8100.0 / 100.0Strict
TkA01G589950LXL04_000760JCVI_TKOH_0003791.9100.0 / 100.0Probable
TkA01G589970LXL04_000759JCVI_TKOH_00037100.095.111 / 49.652Review
TkA01G589990LXL04_000758JCVI_TKOH_0003799.4100.0 / 100.0Strict
TkA01G590020LXL04_000757JCVI_TKOH_0003799.7100.0 / 100.0Complex
TkA01G590070LXL04_000755JCVI_TKOH_0003798.3100.0 / 100.0Strict
TkA01G590080LXL04_000754JCVI_TKOH_0003798.4100.0 / 100.0Strict
TkA01G590090LXL04_000753JCVI_TKOH_00037100.098.446 / 76.768Probable
TkA01G590210LXL04_000750JCVI_TKOH_0003797.9100.0 / 100.0Complex
TkA01G590250LXL04_000749JCVI_TKOH_0003799.7100.0 / 100.0Complex
TkA01G590260LXL04_000748JCVI_TKOH_00037100.0100.0 / 100.0Complex
TkA01G590270LXL04_000747JCVI_TKOH_00037100.0100.0 / 100.0Complex
TkA01G590420LXL04_000746JCVI_TKOH_0003797.9100.0 / 100.0Strict
TkA01G590430LXL04_000744JCVI_TKOH_0003799.5100.0 / 100.0Strict
TkA01G590490LXL04_000743JCVI_TKOH_0003798.5100.0 / 100.0Strict
TkA01G590510LXL04_000739JCVI_TKOH_00037100.079.412 / 45.251Complex
TkA01G590680LXL04_000733JCVI_TKOH_0003786.898.726 / 40.736Complex
TkA01G590870LXL04_000723JCVI_TKOH_0003756.096.994 / 91.958Complex
TkA01G590890LXL04_000730JCVI_TKOH_0003799.898.328 / 70.633Complex
TkA01G591140LXL04_000726JCVI_TKOH_00037100.0100.0 / 100.0Strict
TkA01G591180LXL04_000724JCVI_TKOH_0003799.3100.0 / 100.0Strict
TkA01G591230LXL04_000723JCVI_TKOH_0003799.4100.0 / 100.0Complex
TkA01G591800LXL04_000720JCVI_TKOH_00037100.0100.0 / 65.971Complex
TkA01G592560LXL04_000713JCVI_TKOH_0003797.6100.0 / 100.0Strict
TkA01G592640LXL04_000712JCVI_TKOH_0003796.1100.0 / 100.0Complex
TkA01G592680LXL04_000711JCVI_TKOH_00037100.0100.0 / 100.0Strict
TkA01G592700LXL04_000710JCVI_TKOH_00037100.0100.0 / 100.0Review
TkA01G592820LXL04_000709JCVI_TKOH_00037100.0100.0 / 100.0Complex
TkA01G592860LXL04_000708JCVI_TKOH_0003796.099.344 / 96.543Strict
TkA01G592880LXL04_000707JCVI_TKOH_0003799.2100.0 / 83.66Review
TkA01G592890LXL04_000705JCVI_TKOH_0003798.9100.0 / 56.086Review
TkA01G592940LXL04_000704JCVI_TKOH_0003799.7100.0 / 100.0Strict
TkA01G592990LXL04_000703JCVI_TKOH_0003797.7100.0 / 80.864Strict
TkA01G593060LXL04_000699JCVI_TKOH_0003796.7100.0 / 100.0Strict
TkA01G593070LXL04_000698JCVI_TKOH_0003799.1100.0 / 100.0Strict
TkA01G593120LXL04_000696JCVI_TKOH_0003787.4100.0 / 100.0Review
TkA01G593150LXL04_000695JCVI_TKOH_0003798.6100.0 / 85.455Strict
TkA01G593260LXL04_000694JCVI_TKOH_0003799.696.296 / 11.812Review
TkA01G593390LXL04_000692JCVI_TKOH_0003799.4100.0 / 100.0Complex
TkA01G593430LXL04_000691JCVI_TKOH_0003799.3100.0 / 96.129Strict
TkA01G593440LXL04_000690JCVI_TKOH_0003791.287.895 / 88.78Complex
TkA01G593650LXL04_000689JCVI_TKOH_0003799.4100.0 / 100.0Strict
TkA01G593690LXL04_000709JCVI_TKOH_0003780.4100.0 / 100.0Complex
TkA01G593710LXL04_000688JCVI_TKOH_00037100.0100.0 / 100.0Strict
TkA01G593720LXL04_000687JCVI_TKOH_0003796.9100.0 / 100.0Complex
TkA01G593760LXL04_000686JCVI_TKOH_0003792.5100.0 / 100.0Probable
TkA01G593990LXL04_000685JCVI_TKOH_0003790.8100.0 / 100.0Probable
TkA01G594030LXL04_000683JCVI_TKOH_00037100.086.158 / 26.708Review
TkA01G594130LXL04_000682JCVI_TKOH_0003799.1100.0 / 100.0Review
TkA01G594250LXL04_000681JCVI_TKOH_00037100.0100.0 / 100.0Strict
TkA01G594270LXL04_000680JCVI_TKOH_0003799.5100.0 / 90.367Complex
TkA01G594290LXL04_000679JCVI_TKOH_0003799.7100.0 / 100.0Strict
TkA01G594370LXL04_000677JCVI_TKOH_0003790.782.143 / 75.0Complex
TkA01G594660LXL04_000676JCVI_TKOH_0003797.6100.0 / 86.745Strict
TkA01G594750LXL04_000674JCVI_TKOH_0003799.7100.0 / 100.0Strict
TkA01G594760LXL04_000673JCVI_TKOH_00037100.0100.0 / 100.0Strict
TkA01G594770LXL04_000672JCVI_TKOH_00037100.0100.0 / 100.0Strict
TkA01G594790LXL04_000671JCVI_TKOH_0003799.495.868 / 94.309Strict
TkA01G594800LXL04_000670JCVI_TKOH_0003799.693.852 / 80.07Strict
TkA01G594810LXL04_000669JCVI_TKOH_0003799.699.198 / 90.164Strict
TkA01G594920LXL04_000667JCVI_TKOH_0003754.685.768 / 82.51Complex
TkA01G595480LXL04_000659JCVI_TKOH_0003791.1100.0 / 100.0Probable
TkA01G595620LXL04_000657JCVI_TKOH_0003799.3100.0 / 86.982Strict
TkA01G595640LXL04_000656JCVI_TKOH_0003783.5100.0 / 79.344Review
TkA01G596000LXL04_000652JCVI_TKOH_0003768.9100.0 / 100.0Complex
TkA01G596170LXL04_000650JCVI_TKOH_0003796.378.155 / 35.294Complex
TkA01G596180LXL04_000650JCVI_TKOH_0003779.6100.0 / 58.606Complex
TkA01G596240LXL04_000649JCVI_TKOH_0003797.3100.0 / 100.0Complex
TkA01G596250LXL04_000648JCVI_TKOH_0003799.6100.0 / 100.0Strict
TkA01G596400LXL04_000647JCVI_TKOH_0003798.499.59 / 48.992Review
TkA01G596980LXL04_000645JCVI_TKOH_0003799.298.623 / 79.911Probable
TkA01G597310LXL04_000647JCVI_TKOH_0003799.6100.0 / 100.0Strict
TkA01G597740LXL04_000645JCVI_TKOH_0003799.4100.0 / 40.179Review
TkA01G597950LXL04_000644JCVI_TKOH_0003799.9100.0 / 100.0Strict
TkA01G598010LXL04_000643JCVI_TKOH_0003798.688.163 / 100.0Complex
TkA01G598060LXL04_000641JCVI_TKOH_0003799.275.856 / 83.648Probable
TkA01G598210LXL04_000638JCVI_TKOH_00037100.0100.0 / 100.0Complex
TkA01G598240LXL04_000636JCVI_TKOH_0003797.7100.0 / 100.0Complex
TkA01G598270LXL04_000635JCVI_TKOH_0003798.097.07 / 91.053Strict
TkA01G598600LXL04_000633JCVI_TKOH_0003798.7100.0 / 92.105Strict
TkA01G598610LXL04_000631JCVI_TKOH_0003797.8100.0 / 100.0Strict
TkA01G598750LXL04_000628JCVI_TKOH_00037100.0100.0 / 100.0Strict
TkA01G598780LXL04_000626JCVI_TKOH_0003799.8100.0 / 100.0Complex
TkA01G598790LXL04_000625JCVI_TKOH_00037100.092.73 / 92.73Strict
TkA01G598800LXL04_000624JCVI_TKOH_0003799.2100.0 / 100.0Strict
TkA01G598810LXL04_000622JCVI_TKOH_0003797.390.426 / 53.236Review
TkA01G598820LXL04_000621JCVI_TKOH_0003771.7100.0 / 77.97Review
TkA01G598920LXL04_000623JCVI_TKOH_0003782.5100.0 / 92.236Complex
TkA01G598950LXL04_000622JCVI_TKOH_0003771.2100.0 / 66.806Complex
TkA01G598960LXL04_000620JCVI_TKOH_0003770.1100.0 / 77.75Review
TkA01G598980LXL04_000619JCVI_TKOH_0003796.2100.0 / 100.0Strict
TkA01G599040LXL04_000616JCVI_TKOH_0003799.487.166 / 41.432Review
TkA01G599150LXL04_000615JCVI_TKOH_00037100.063.243 / 21.828Complex
TkA01G599510LXL04_000613JCVI_TKOH_00037100.0100.0 / 100.0Strict
TkA01G599520LXL04_000612JCVI_TKOH_00037100.099.18 / 75.155Probable
TkA01G599560LXL04_000611JCVI_TKOH_0003795.1100.0 / 100.0Strict
TkA01G599850LXL04_000608JCVI_TKOH_0003780.8100.0 / 100.0Complex
TkA01G599880LXL04_000606JCVI_TKOH_0003798.180.524 / 39.02Review
TkA01G599940LXL04_000602JCVI_TKOH_0003797.652.866 / 18.61Complex
TkA01G600500LXL04_000596JCVI_TKOH_0003797.196.392 / 83.514Complex
TkA01G600560LXL04_000595JCVI_TKOH_00037100.099.045 / 82.933Complex
TkA01G600930LXL04_000594JCVI_TKOH_0003799.242.532 / 43.522Review
TkA01G601220LXL04_000592JCVI_TKOH_0003799.7100.0 / 100.0Complex
TkA01G601340LXL04_000589JCVI_TKOH_0003796.579.439 / 61.151Complex
TkA01G601890LXL04_000587JCVI_TKOH_0003788.7100.0 / 100.0Complex
TkA01G601900LXL04_000586JCVI_TKOH_0003796.499.194 / 98.204Strict
TkA01G601920LXL04_000584JCVI_TKOH_0003796.0100.0 / 100.0Strict
TkA01G601940LXL04_000583JCVI_TKOH_0003795.2100.0 / 100.0Strict
TkA01G601970LXL04_000582JCVI_TKOH_0003799.3100.0 / 100.0Strict
TkA01G601990LXL04_000580JCVI_TKOH_0003799.490.456 / 100.0Complex
TkA01G602100LXL04_000577JCVI_TKOH_0003788.192.381 / 100.0Complex
TkA01G602180LXL04_000576JCVI_TKOH_0003799.4100.0 / 100.0Review
TkA01G602230LXL04_000574JCVI_TKOH_00037100.098.953 / 92.421Complex
TkA01G602250LXL04_000573JCVI_TKOH_0003797.598.367 / 25.107Review
TkA01G602290LXL04_000571JCVI_TKOH_0003769.2100.0 / 100.0Review
TkA01G602300LXL04_000570JCVI_TKOH_00037100.085.385 / 27.139Review
TkA01G602310LXL04_000569JCVI_TKOH_0003798.790.774 / 97.002Strict
TkA01G602320LXL04_000568JCVI_TKOH_0003773.7100.0 / 32.282Complex
TkA01G602370LXL04_000565JCVI_TKOH_0003771.299.048 / 20.676Complex
TkA01G602380LXL04_000564JCVI_TKOH_00037100.088.479 / 19.773Review
TkA01G602390LXL04_000563JCVI_TKOH_00037100.0100.0 / 69.03Complex
TkA01G602460LXL04_000562JCVI_TKOH_0003797.9100.0 / 100.0Strict
TkA01G602560LXL04_000560JCVI_TKOH_0003797.592.991 / 100.0Strict
TkA01G602570LXL04_000559JCVI_TKOH_0003799.2100.0 / 100.0Strict
TkA01G602610LXL04_000558JCVI_TKOH_0003798.4100.0 / 100.0Strict
TkA01G602960LXL04_000556JCVI_TKOH_0003780.0100.0 / 100.0Review
TkA01G602970LXL04_000553JCVI_TKOH_0003781.576.356 / 70.259Complex
TkA01G602990LXL04_000551JCVI_TKOH_0003794.1100.0 / 93.827Complex
TkA01G603000LXL04_000549JCVI_TKOH_0003791.7100.0 / 68.852Review
TkA01G603010LXL04_000551JCVI_TKOH_0003795.5100.0 / 95.679Review
TkA01G603200LXL04_000546JCVI_TKOH_0003797.6100.0 / 100.0Strict
TkA01G603210LXL04_000545JCVI_TKOH_0003797.0100.0 / 100.0Strict
TkA01G603240LXL04_000542JCVI_TKOH_0003799.7100.0 / 100.0Strict
TkA01G603850LXL04_000539JCVI_TKOH_0003796.688.258 / 64.543Review
TkA01G604230LXL04_000537JCVI_TKOH_0003798.989.442 / 100.0Complex
TkA01G604600LXL04_000533JCVI_TKOH_0003798.7100.0 / 100.0Review
TkA01G604670LXL04_000530JCVI_TKOH_00037100.0100.0 / 100.0Complex
TkA01G604800LXL04_000533JCVI_TKOH_0003793.477.436 / 100.0Complex
TkA01G604850LXL04_000528JCVI_TKOH_0003765.6100.0 / 100.0Complex
TkA01G604870LXL04_000527JCVI_TKOH_0003796.667.89 / 78.307Complex
TkA01G604930LXL04_000526JCVI_TKOH_00037100.0100.0 / 100.0Review
TkA01G604940LXL04_000525JCVI_TKOH_0003798.7100.0 / 100.0Strict
TkA01G605060LXL04_000524JCVI_TKOH_0003798.6100.0 / 100.0Strict
TkA01G605070LXL04_000523JCVI_TKOH_0003797.2100.0 / 100.0Strict
TkA01G605140LXL04_000521JCVI_TKOH_0003799.0100.0 / 100.0Strict
TkA01G605170LXL04_000518JCVI_TKOH_0003799.5100.0 / 73.93Complex
TkA01G606460LXL04_000513JCVI_TKOH_0003798.4100.0 / 96.024Review
TkA01G607150LXL04_000513JCVI_TKOH_0003798.580.06 / 81.04Review
TkA01G607170LXL04_000512JCVI_TKOH_0003799.1100.0 / 100.0Strict
TkA01G607180LXL04_000511JCVI_TKOH_0003799.4100.0 / 100.0Strict
TkA01G607220LXL04_000509JCVI_TKOH_00037100.0100.0 / 100.0Strict
TkA01G607770LXL04_000504JCVI_TKOH_0003798.1100.0 / 100.0Complex
TkA01G607840LXL04_000503JCVI_TKOH_0003796.3100.0 / 100.0Strict
TkA01G608510LXL04_000496JCVI_TKOH_0003799.999.153 / 97.772Strict
TkA01G608550LXL04_000530JCVI_TKOH_00037100.0100.0 / 100.0Complex
TkA01G608560LXL04_000494JCVI_TKOH_0003790.9100.0 / 100.0Probable
TkA01G608630LXL04_000492JCVI_TKOH_0003798.8100.0 / 100.0Complex