Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00128

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 44

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00128

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00128 Chr03 26166774-29220640 Chr02 33699997-36141455 mixed High 44 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00128`	Chr03:26166774-29220640	Chr02:33699997-36141455	mixed	44	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 44 · Showing 1–44 · Page 1/1

Download All Anchors TSV

TkA03G102250 → LXL04_007025

71.4%

TkA03G103320 → LXL04_007013

57.1%

TkA03G103370 → LXL04_007015

99.2%

TkA03G103380 → LXL04_007016

98.6%

TkA03G103600 → LXL04_007017

99.8%

TkA03G103720 → LXL04_007018

99.2%

TkA03G104510 → LXL04_007028

100.0%

TkA03G104570 → LXL04_007029

94.1%

TkA03G104760 → LXL04_007031

98.9%

TkA03G105100 → LXL04_007034

99.7%

TkA03G105130 → LXL04_007035

100.0%

TkA03G105150 → LXL04_007036

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA03G102250`	`LXL04_007025`	`JCVI_TKOH_00128`	71.4	74.107 / 96.552	Review
`TkA03G103320`	`LXL04_007013`	`JCVI_TKOH_00128`	57.1	97.768 / 28.818	Complex
`TkA03G103370`	`LXL04_007015`	`JCVI_TKOH_00128`	99.2	100.0 / 75.155	Complex
`TkA03G103380`	`LXL04_007016`	`JCVI_TKOH_00128`	98.6	100.0 / 100.0	Review
`TkA03G103600`	`LXL04_007017`	`JCVI_TKOH_00128`	99.8	99.556 / 55.446	Review
`TkA03G103720`	`LXL04_007018`	`JCVI_TKOH_00128`	99.2	100.0 / 100.0	Strict
`TkA03G104510`	`LXL04_007028`	`JCVI_TKOH_00128`	100.0	100.0 / 100.0	Strict
`TkA03G104570`	`LXL04_007029`	`JCVI_TKOH_00128`	94.1	100.0 / 90.062	Probable
`TkA03G104760`	`LXL04_007031`	`JCVI_TKOH_00128`	98.9	94.906 / 96.477	Complex
`TkA03G105100`	`LXL04_007034`	`JCVI_TKOH_00128`	99.7	100.0 / 100.0	Strict
`TkA03G105130`	`LXL04_007035`	`JCVI_TKOH_00128`	100.0	100.0 / 100.0	Strict
`TkA03G105150`	`LXL04_007036`	`JCVI_TKOH_00128`	100.0	100.0 / 100.0	Strict
`TkA03G105170`	`LXL04_007037`	`JCVI_TKOH_00128`	72.8	100.0 / 100.0	Complex
`TkA03G105280`	`LXL04_007038`	`JCVI_TKOH_00128`	99.3	100.0 / 100.0	Strict
`TkA03G105290`	`LXL04_007039`	`JCVI_TKOH_00128`	83.1	100.0 / 99.329	Review
`TkA03G105330`	`LXL04_007041`	`JCVI_TKOH_00128`	99.4	100.0 / 90.955	Strict
`TkA03G105380`	`LXL04_007043`	`JCVI_TKOH_00128`	100.0	100.0 / 100.0	Strict
`TkA03G105500`	`LXL04_007044`	`JCVI_TKOH_00128`	100.0	100.0 / 100.0	Review
`TkA03G105510`	`LXL04_007045`	`JCVI_TKOH_00128`	94.6	100.0 / 68.21	Complex
`TkA03G105760`	`LXL04_007047`	`JCVI_TKOH_00128`	99.8	100.0 / 90.235	Strict
`TkA03G105770`	`LXL04_007049`	`JCVI_TKOH_00128`	98.4	100.0 / 100.0	Strict
`TkA03G105930`	`LXL04_007050`	`JCVI_TKOH_00128`	92.5	98.107 / 50.847	Review
`TkA03G106500`	`LXL04_007052`	`JCVI_TKOH_00128`	35.6	87.379 / 92.632	Complex
`TkA03G107030`	`LXL04_007056`	`JCVI_TKOH_00128`	96.9	100.0 / 100.0	Review
`TkA03G107340`	`LXL04_007060`	`JCVI_TKOH_00128`	97.2	60.335 / 54.0	Complex
`TkA03G107880`	`LXL04_007061`	`JCVI_TKOH_00128`	88.6	100.0 / 100.0	Review
`TkA03G108120`	`LXL04_007062`	`JCVI_TKOH_00128`	76.7	97.222 / 66.85	Complex
`TkA03G108640`	`LXL04_007066`	`JCVI_TKOH_00128`	100.0	99.647 / 28.659	Review
`TkA03G108650`	`LXL04_007066`	`JCVI_TKOH_00128`	98.8	99.701 / 67.785	Complex
`TkA03G108830`	`LXL04_007070`	`JCVI_TKOH_00128`	96.5	100.0 / 100.0	Strict
`TkA03G111300`	`LXL04_007074`	`JCVI_TKOH_00128`	87.1	100.0 / 100.0	Review
`TkA03G111400`	`LXL04_007077`	`JCVI_TKOH_00128`	99.6	100.0 / 100.0	Complex
`TkA03G111410`	`LXL04_007078`	`JCVI_TKOH_00128`	97.7	100.0 / 100.0	Strict
`TkA03G111960`	`LXL04_007082`	`JCVI_TKOH_00128`	100.0	100.0 / 100.0	Review
`TkA03G112170`	`LXL04_007082`	`JCVI_TKOH_00128`	99.4	100.0 / 100.0	Complex
`TkA03G112250`	`LXL04_007085`	`JCVI_TKOH_00128`	100.0	100.0 / 84.783	Complex
`TkA03G112890`	`LXL04_007086`	`JCVI_TKOH_00128`	100.0	100.0 / 100.0	Complex
`TkA03G113220`	`LXL04_007088`	`JCVI_TKOH_00128`	68.6	85.549 / 11.237	Complex
`TkA03G113260`	`LXL04_007088`	`JCVI_TKOH_00128`	95.5	100.0 / 36.727	Review
`TkA03G113280`	`LXL04_007090`	`JCVI_TKOH_00128`	96.1	100.0 / 100.0	Review
`TkA03G113760`	`LXL04_007098`	`JCVI_TKOH_00128`	62.2	85.714 / 93.411	Complex
`TkA03G113790`	`LXL04_007099`	`JCVI_TKOH_00128`	99.3	100.0 / 100.0	Complex
`TkA03G113990`	`LXL04_007101`	`JCVI_TKOH_00128`	100.0	100.0 / 100.0	Review
`TkA03G114020`	`LXL04_007102`	`JCVI_TKOH_00128`	99.2	100.0 / 100.0	Complex