Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00124

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 96

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00124

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00124 Chr03 8780825-13221942 Chr02 9832415-14197606 mixed High 96 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00124`	Chr03:8780825-13221942	Chr02:9832415-14197606	mixed	96	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 96 · Showing 1–96 · Page 1/1

Download All Anchors TSV

TkA03G032980 → LXL04_006399

99.4%

TkA03G033540 → LXL04_006400

98.6%

TkA03G033640 → LXL04_006403

70.3%

TkA03G034480 → LXL04_006407

99.7%

TkA03G035110 → LXL04_006413

100.0%

TkA03G035380 → LXL04_006419

99.3%

TkA03G035500 → LXL04_006420

91.4%

TkA03G035530 → LXL04_006422

95.7%

TkA03G035540 → LXL04_006423

98.1%

TkA03G035770 → LXL04_006424

98.3%

TkA03G036150 → LXL04_006425

99.1%

TkA03G036310 → LXL04_006426

94.4%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA03G032980`	`LXL04_006399`	`JCVI_TKOH_00124`	99.4	100.0 / 51.964	Review
`TkA03G033540`	`LXL04_006400`	`JCVI_TKOH_00124`	98.6	56.557 / 100.0	Review
`TkA03G033640`	`LXL04_006403`	`JCVI_TKOH_00124`	70.3	65.138 / 28.94	Complex
`TkA03G034480`	`LXL04_006407`	`JCVI_TKOH_00124`	99.7	98.0 / 98.847	Strict
`TkA03G035110`	`LXL04_006413`	`JCVI_TKOH_00124`	100.0	69.492 / 31.783	Review
`TkA03G035380`	`LXL04_006419`	`JCVI_TKOH_00124`	99.3	100.0 / 76.826	Probable
`TkA03G035500`	`LXL04_006420`	`JCVI_TKOH_00124`	91.4	99.871 / 94.784	Probable
`TkA03G035530`	`LXL04_006422`	`JCVI_TKOH_00124`	95.7	93.286 / 96.167	Strict
`TkA03G035540`	`LXL04_006423`	`JCVI_TKOH_00124`	98.1	92.527 / 93.19	Strict
`TkA03G035770`	`LXL04_006424`	`JCVI_TKOH_00124`	98.3	100.0 / 90.794	Strict
`TkA03G036150`	`LXL04_006425`	`JCVI_TKOH_00124`	99.1	86.111 / 82.51	Strict
`TkA03G036310`	`LXL04_006426`	`JCVI_TKOH_00124`	94.4	96.296 / 82.447	Probable
`TkA03G036320`	`LXL04_006427`	`JCVI_TKOH_00124`	99.7	100.0 / 100.0	Strict
`TkA03G036410`	`LXL04_006429`	`JCVI_TKOH_00124`	82.7	100.0 / 69.51	Complex
`TkA03G036420`	`LXL04_006430`	`JCVI_TKOH_00124`	99.4	94.461 / 44.938	Review
`TkA03G036900`	`LXL04_006431`	`JCVI_TKOH_00124`	58.9	100.0 / 27.674	Complex
`TkA03G037010`	`LXL04_006432`	`JCVI_TKOH_00124`	90.2	100.0 / 100.0	Probable
`TkA03G037040`	`LXL04_006434`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Strict
`TkA03G037080`	`LXL04_006435`	`JCVI_TKOH_00124`	98.1	100.0 / 99.814	Strict
`TkA03G037090`	`LXL04_006436`	`JCVI_TKOH_00124`	95.6	95.48 / 59.612	Review
`TkA03G037110`	`LXL04_006439`	`JCVI_TKOH_00124`	97.8	99.275 / 99.275	Review
`TkA03G037180`	`LXL04_006443`	`JCVI_TKOH_00124`	98.2	91.054 / 44.255	Review
`TkA03G037390`	`LXL04_006446`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Review
`TkA03G037410`	`LXL04_006447`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Complex
`TkA03G037540`	`LXL04_006449`	`JCVI_TKOH_00124`	99.2	100.0 / 100.0	Strict
`TkA03G038320`	`LXL04_006453`	`JCVI_TKOH_00124`	92.8	94.915 / 99.66	Complex
`TkA03G039360`	`LXL04_006461`	`JCVI_TKOH_00124`	99.4	100.0 / 55.998	Review
`TkA03G039380`	`LXL04_006462`	`JCVI_TKOH_00124`	100.0	100.0 / 72.636	Probable
`TkA03G039390`	`LXL04_006463`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Strict
`TkA03G039410`	`LXL04_006464`	`JCVI_TKOH_00124`	75.6	98.802 / 88.75	Review
`TkA03G039740`	`LXL04_006467`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Complex
`TkA03G039760`	`LXL04_006468`	`JCVI_TKOH_00124`	99.3	100.0 / 98.091	Strict
`TkA03G040210`	`LXL04_006471`	`JCVI_TKOH_00124`	98.6	100.0 / 100.0	Strict
`TkA03G040330`	`LXL04_006473`	`JCVI_TKOH_00124`	95.1	58.571 / 100.0	Review
`TkA03G040380`	`LXL04_006473`	`JCVI_TKOH_00124`	95.1	58.571 / 100.0	Review
`TkA03G040940`	`LXL04_006479`	`JCVI_TKOH_00124`	99.6	89.6 / 76.712	Probable
`TkA03G041020`	`LXL04_006483`	`JCVI_TKOH_00124`	99.7	93.412 / 93.192	Strict
`TkA03G041070`	`LXL04_006484`	`JCVI_TKOH_00124`	76.2	99.479 / 37.338	Complex
`TkA03G041110`	`LXL04_006486`	`JCVI_TKOH_00124`	99.7	100.0 / 100.0	Strict
`TkA03G041120`	`LXL04_006487`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Complex
`TkA03G041130`	`LXL04_006489`	`JCVI_TKOH_00124`	99.3	100.0 / 100.0	Strict
`TkA03G041140`	`LXL04_006490`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Strict
`TkA03G041160`	`LXL04_006490`	`JCVI_TKOH_00124`	98.6	51.079 / 19.888	Complex
`TkA03G042230`	`LXL04_006491`	`JCVI_TKOH_00124`	99.1	100.0 / 100.0	Strict
`TkA03G042240`	`LXL04_006492`	`JCVI_TKOH_00124`	98.2	100.0 / 100.0	Review
`TkA03G042270`	`LXL04_006493`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Strict
`TkA03G042290`	`LXL04_006494`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Strict
`TkA03G042300`	`LXL04_006495`	`JCVI_TKOH_00124`	98.6	99.291 / 72.917	Probable
`TkA03G042310`	`LXL04_006496`	`JCVI_TKOH_00124`	97.7	100.0 / 91.684	Complex
`TkA03G042450`	`LXL04_006498`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Complex
`TkA03G042600`	`LXL04_006496`	`JCVI_TKOH_00124`	68.2	92.086 / 18.526	Complex
`TkA03G042630`	`LXL04_006496`	`JCVI_TKOH_00124`	80.0	96.986 / 43.579	Complex
`TkA03G043140`	`LXL04_006502`	`JCVI_TKOH_00124`	76.5	81.439 / 76.711	Complex
`TkA03G043160`	`LXL04_006502`	`JCVI_TKOH_00124`	95.7	100.0 / 80.552	Complex
`TkA03G043230`	`LXL04_006504`	`JCVI_TKOH_00124`	64.9	100.0 / 83.211	Complex
`TkA03G043450`	`LXL04_006505`	`JCVI_TKOH_00124`	94.0	98.698 / 99.846	Complex
`TkA03G043670`	`LXL04_006506`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Strict
`TkA03G043700`	`LXL04_006507`	`JCVI_TKOH_00124`	99.2	100.0 / 100.0	Complex
`TkA03G044370`	`LXL04_006511`	`JCVI_TKOH_00124`	91.2	100.0 / 100.0	Probable
`TkA03G044430`	`LXL04_006515`	`JCVI_TKOH_00124`	99.4	99.858 / 96.97	Strict
`TkA03G044550`	`LXL04_006516`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Strict
`TkA03G044930`	`LXL04_006517`	`JCVI_TKOH_00124`	97.4	99.138 / 70.552	Probable
`TkA03G044940`	`LXL04_006518`	`JCVI_TKOH_00124`	100.0	79.365 / 83.333	Probable
`TkA03G045070`	`LXL04_006522`	`JCVI_TKOH_00124`	99.7	100.0 / 100.0	Strict
`TkA03G045110`	`LXL04_006523`	`JCVI_TKOH_00124`	98.6	83.012 / 71.429	Probable
`TkA03G045200`	`LXL04_006527`	`JCVI_TKOH_00124`	76.8	74.0 / 85.648	Complex
`TkA03G045240`	`LXL04_006527`	`JCVI_TKOH_00124`	94.7	95.667 / 69.907	Complex
`TkA03G046500`	`LXL04_006530`	`JCVI_TKOH_00124`	99.1	100.0 / 100.0	Strict
`TkA03G046520`	`LXL04_006531`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Complex
`TkA03G046600`	`LXL04_006538`	`JCVI_TKOH_00124`	99.1	98.34 / 61.244	Complex
`TkA03G046610`	`LXL04_006539`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Complex
`TkA03G046620`	`LXL04_006540`	`JCVI_TKOH_00124`	97.7	100.0 / 95.768	Complex
`TkA03G046640`	`LXL04_006541`	`JCVI_TKOH_00124`	98.8	99.537 / 91.102	Complex
`TkA03G046860`	`LXL04_006541`	`JCVI_TKOH_00124`	66.5	99.371 / 75.847	Complex
`TkA03G047010`	`LXL04_006543`	`JCVI_TKOH_00124`	82.8	100.0 / 100.0	Complex
`TkA03G047320`	`LXL04_006545`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Strict
`TkA03G047370`	`LXL04_006547`	`JCVI_TKOH_00124`	100.0	100.0 / 68.75	Review
`TkA03G047410`	`LXL04_006548`	`JCVI_TKOH_00124`	99.3	100.0 / 100.0	Strict
`TkA03G047460`	`LXL04_006551`	`JCVI_TKOH_00124`	100.0	100.0 / 90.566	Review
`TkA03G047480`	`LXL04_006552`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Review
`TkA03G047780`	`LXL04_006553`	`JCVI_TKOH_00124`	99.3	100.0 / 53.195	Review
`TkA03G047790`	`LXL04_006554`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Strict
`TkA03G047960`	`LXL04_006556`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Strict
`TkA03G048120`	`LXL04_006557`	`JCVI_TKOH_00124`	99.5	78.4 / 91.589	Probable
`TkA03G048130`	`LXL04_006558`	`JCVI_TKOH_00124`	98.9	100.0 / 100.0	Complex
`TkA03G048210`	`LXL04_006562`	`JCVI_TKOH_00124`	98.5	100.0 / 86.781	Strict
`TkA03G048220`	`LXL04_006563`	`JCVI_TKOH_00124`	99.4	98.895 / 99.444	Strict
`TkA03G048310`	`LXL04_006564`	`JCVI_TKOH_00124`	69.8	100.0 / 30.682	Complex
`TkA03G048350`	`LXL04_006565`	`JCVI_TKOH_00124`	98.7	100.0 / 100.0	Strict
`TkA03G048520`	`LXL04_006567`	`JCVI_TKOH_00124`	100.0	100.0 / 100.0	Complex
`TkA03G048590`	`LXL04_006568`	`JCVI_TKOH_00124`	98.6	100.0 / 100.0	Complex
`TkA03G048610`	`LXL04_006570`	`JCVI_TKOH_00124`	63.5	90.541 / 56.369	Review
`TkA03G048910`	`LXL04_006573`	`JCVI_TKOH_00124`	99.5	97.674 / 100.0	Complex
`TkA03G049060`	`LXL04_006575`	`JCVI_TKOH_00124`	99.4	100.0 / 100.0	Complex
`TkA03G049070`	`LXL04_006576`	`JCVI_TKOH_00124`	97.2	100.0 / 73.171	Probable
`TkA03G049220`	`LXL04_006577`	`JCVI_TKOH_00124`	91.2	98.361 / 50.932	Review