LXL04_006425 | RubberDandelionOmics

Gene overview

LXL04_006425

Reference: OH-1004 Chr: Chr02 Coordinates: 10487079-10488033 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

792 bp · LXL04_006425|LXL04_006425|OH1004|cDNA

ATGTATTCCTCAAATCTTTTTCCACAGATTCCCAATGGCTTCTCTCTTCCAAGTTCTTTCTTTTACCATGAAAAAGAAGATCATCATGTTCACTATACCTACCACCAGAAGAACGGCGACCCGTTTTTCTCCGGCGATTTTCTTTCTCCGGTCACGGAGAATGTTACTACAATCAAAGAAGATTTTGTTACGCAACAACAGCAGATTTGTGAAGATCATGATCATTCCGATCTTTTGGGTTCTGTAATTTCTCCGTATAA...

CDS

Download CDS FASTA

792 bp · LXL04_006425|LXL04_006425|OH1004|CDS

ATGTATTCCTCAAATCTTTTTCCACAGATTCCCAATGGCTTCTCTCTTCCAAGTTCTTTCTTTTACCATGAAAAAGAAGATCATCATGTTCACTATACCTACCACCAGAAGAACGGCGACCCGTTTTTCTCCGGCGATTTTCTTTCTCCGGTCACGGAGAATGTTACTACAATCAAAGAAGATTTTGTTACGCAACAACAGCAGATTTGTGAAGATCATGATCATTCCGATCTTTTGGGTTCTGTAATTTCTCCGTATAA...

Protein

Download Protein FASTA

263 aa · LXL04_006425|LXL04_006425|OH1004|PROTEIN

MYSSNLFPQIPNGFSLPSSFFYHEKEDHHVHYTYHQKNGDPFFSGDFLSPVTENVTTIKEDFVTQQQQICEDHDHSDLLGSVISPYKKRSLMAASKKGGHSKIHTARGPRDRRVRLSIEISRKFFCLQELLGFDKASKTLDWLFTKSLTAINELVEENSCSSSTVTDQCRVSFLETINGGIIEDKAQKRKLLPNCVHSKKKKTTGICKAGVQKDLERDQLRTEARARARERTREKLRKKEVRKKEERKPLGDPDAAWSKI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006425`
TK1151 ID	TkA03G036150
OH-1004 ID	LXL04_006425
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 86.111 / OH-1004 82.510 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006425

Location Chr02:10487079-10488033 (+)

Description Similar to CYC: Transcription factor CYCLOIDEA (Fragment)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67260`	Involved in petal morphogenesis.	Control of corolla monosymmetry in the Brassicaceae Iberis amara.2007 · DOI: 10.1073/pnas.0705338104

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006425 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009799 specification of symmetry Biological Process

GO:0009908 flower development Biological Process

GO:0048262 determination of dorsal/ventral asymmetry Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G67260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.970

Rank 1 · LXL04_006425 · OH-1004

Cytoplasm0.097

Rank 2 · LXL04_006425 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_006425 · OH-1004

Endoplasmic reticulum0.014

Rank 4 · LXL04_006425 · OH-1004

Plastid0.011

Rank 5 · LXL04_006425 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03634.20TCP95-238 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006425	`PF03634.20`	TCP	95	238	4.5e-35	122.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FYG7`	Arabidopsis thaliana	Transcription factor TCP1	38.415%	Swiss-Prot	moderate database homology

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