Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00357

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 50

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00357

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00357 Chr08 88466894-95737373 Chr07 78020588-87053020 mixed High 50 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00357`	Chr08:88466894-95737373	Chr07:78020588-87053020	mixed	50	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 50 · Showing 1–50 · Page 1/1

Download All Anchors TSV

TkA08G345090 → LXL04_034048

99.4%

TkA08G345160 → LXL04_034050

99.5%

TkA08G345640 → LXL04_034052

92.5%

TkA08G346080 → LXL04_034057

99.8%

TkA08G348140 → LXL04_034069

76.8%

TkA08G348610 → LXL04_034066

79.5%

TkA08G348710 → LXL04_034067

99.4%

TkA08G349150 → LXL04_034069

100.0%

TkA08G350450 → LXL04_034070

95.6%

TkA08G350480 → LXL04_034075

95.9%

TkA08G350650 → LXL04_034075

98.8%

TkA08G354610 → LXL04_034096

72.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA08G345090`	`LXL04_034048`	`JCVI_TKOH_00357`	99.4	99.053 / 83.223	Strict
`TkA08G345160`	`LXL04_034050`	`JCVI_TKOH_00357`	99.5	100.0 / 100.0	Strict
`TkA08G345640`	`LXL04_034052`	`JCVI_TKOH_00357`	92.5	51.948 / 69.565	Review
`TkA08G346080`	`LXL04_034057`	`JCVI_TKOH_00357`	99.8	99.333 / 100.0	Strict
`TkA08G348140`	`LXL04_034069`	`JCVI_TKOH_00357`	76.8	99.728 / 99.185	Complex
`TkA08G348610`	`LXL04_034066`	`JCVI_TKOH_00357`	79.5	100.0 / 100.0	Complex
`TkA08G348710`	`LXL04_034067`	`JCVI_TKOH_00357`	99.4	97.283 / 66.791	Complex
`TkA08G349150`	`LXL04_034069`	`JCVI_TKOH_00357`	100.0	100.0 / 100.0	Review
`TkA08G350450`	`LXL04_034070`	`JCVI_TKOH_00357`	95.6	100.0 / 100.0	Strict
`TkA08G350480`	`LXL04_034075`	`JCVI_TKOH_00357`	95.9	97.321 / 44.764	Review
`TkA08G350650`	`LXL04_034075`	`JCVI_TKOH_00357`	98.8	100.0 / 100.0	Strict
`TkA08G354610`	`LXL04_034096`	`JCVI_TKOH_00357`	72.0	100.0 / 83.838	Complex
`TkA08G355320`	`LXL04_034096`	`JCVI_TKOH_00357`	88.0	100.0 / 83.838	Complex
`TkA08G357110`	`LXL04_034097`	`JCVI_TKOH_00357`	90.9	92.665 / 50.585	Review
`TkA08G357230`	`LXL04_034098`	`JCVI_TKOH_00357`	100.0	100.0 / 100.0	Strict
`TkA08G357500`	`LXL04_034099`	`JCVI_TKOH_00357`	100.0	87.85 / 84.685	Strict
`TkA08G358180`	`LXL04_034103`	`JCVI_TKOH_00357`	99.0	100.0 / 92.889	Review
`TkA08G358220`	`LXL04_034103`	`JCVI_TKOH_00357`	98.6	100.0 / 92.889	Review
`TkA08G358330`	`LXL04_034105`	`JCVI_TKOH_00357`	100.0	100.0 / 100.0	Strict
`TkA08G358360`	`LXL04_034114`	`JCVI_TKOH_00357`	100.0	100.0 / 39.194	Review
`TkA08G358790`	`LXL04_034107`	`JCVI_TKOH_00357`	89.9	86.667 / 23.283	Complex
`TkA08G359270`	`LXL04_034110`	`JCVI_TKOH_00357`	100.0	100.0 / 100.0	Strict
`TkA08G359280`	`LXL04_034111`	`JCVI_TKOH_00357`	100.0	100.0 / 95.455	Review
`TkA08G359980`	`LXL04_034114`	`JCVI_TKOH_00357`	100.0	100.0 / 100.0	Strict
`TkA08G361080`	`LXL04_034116`	`JCVI_TKOH_00357`	98.3	88.806 / 70.833	Probable
`TkA08G361280`	`LXL04_034117`	`JCVI_TKOH_00357`	99.5	93.401 / 100.0	Strict
`TkA08G361290`	`LXL04_034118`	`JCVI_TKOH_00357`	100.0	73.826 / 57.895	Complex
`TkA08G361690`	`LXL04_034120`	`JCVI_TKOH_00357`	98.2	100.0 / 100.0	Strict
`TkA08G361730`	`LXL04_034121`	`JCVI_TKOH_00357`	99.5	100.0 / 100.0	Strict
`TkA08G362280`	`LXL04_034122`	`JCVI_TKOH_00357`	100.0	100.0 / 28.897	Review
`TkA08G362630`	`LXL04_034124`	`JCVI_TKOH_00357`	98.3	95.161 / 36.76	Review
`TkA08G362640`	`LXL04_034125`	`JCVI_TKOH_00357`	97.1	93.28 / 86.75	Strict
`TkA08G363480`	`LXL04_034135`	`JCVI_TKOH_00357`	94.1	95.2 / 74.359	Probable
`TkA08G363610`	`LXL04_034129`	`JCVI_TKOH_00357`	100.0	100.0 / 100.0	Strict
`TkA08G363830`	`LXL04_034131`	`JCVI_TKOH_00357`	100.0	100.0 / 92.896	Review
`TkA08G363930`	`LXL04_034131`	`JCVI_TKOH_00357`	100.0	100.0 / 92.896	Review
`TkA08G366790`	`LXL04_034141`	`JCVI_TKOH_00357`	100.0	100.0 / 100.0	Strict
`TkA08G370490`	`LXL04_034149`	`JCVI_TKOH_00357`	100.0	96.774 / 51.227	Review
`TkA08G370500`	`LXL04_034149`	`JCVI_TKOH_00357`	97.2	99.783 / 49.093	Review
`TkA08G370830`	`LXL04_034151`	`JCVI_TKOH_00357`	100.0	100.0 / 32.54	Review
`TkA08G370840`	`LXL04_034151`	`JCVI_TKOH_00357`	96.9	100.0 / 43.056	Review
`TkA08G372390`	`LXL04_034153`	`JCVI_TKOH_00357`	100.0	100.0 / 100.0	Strict
`TkA08G372750`	`LXL04_034174`	`JCVI_TKOH_00357`	97.7	82.803 / 63.861	Review
`TkA08G372950`	`LXL04_034172`	`JCVI_TKOH_00357`	61.9	100.0 / 100.0	Complex
`TkA08G373600`	`LXL04_034167`	`JCVI_TKOH_00357`	90.1	97.001 / 62.081	Complex
`TkA08G374150`	`LXL04_034166`	`JCVI_TKOH_00357`	91.9	55.484 / 40.0	Review
`TkA08G374180`	`LXL04_034165`	`JCVI_TKOH_00357`	98.0	100.0 / 100.0	Complex
`TkA08G374190`	`LXL04_034164`	`JCVI_TKOH_00357`	99.7	100.0 / 100.0	Complex
`TkA08G374210`	`LXL04_034163`	`JCVI_TKOH_00357`	99.0	75.197 / 48.111	Review
`TkA08G374250`	`LXL04_034161`	`JCVI_TKOH_00357`	99.7	100.0 / 100.0	Strict