Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00023

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 64

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00023

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00023 Chr01 93793679-97480235 Chr01 69525150-73084232 mixed High 64 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00023`	Chr01:93793679-97480235	Chr01:69525150-73084232	mixed	64	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 64 · Showing 1–64 · Page 1/1

Download All Anchors TSV

TkA01G375980 → LXL04_003268

58.5%

TkA01G375990 → LXL04_003271

58.3%

TkA01G376960 → LXL04_003275

96.9%

TkA01G377350 → LXL04_003276

97.7%

TkA01G377630 → LXL04_003278

99.2%

TkA01G380230 → LXL04_003265

97.6%

TkA01G380370 → LXL04_003263

98.7%

TkA01G380380 → LXL04_003262

99.7%

TkA01G380630 → LXL04_003258

76.3%

TkA01G380640 → LXL04_003257

82.1%

TkA01G381010 → LXL04_003255

85.7%

TkA01G381230 → LXL04_003257

92.7%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA01G375980`	`LXL04_003268`	`JCVI_TKOH_00023`	58.5	48.507 / 35.366	Review
`TkA01G375990`	`LXL04_003271`	`JCVI_TKOH_00023`	58.3	82.734 / 63.291	Complex
`TkA01G376960`	`LXL04_003275`	`JCVI_TKOH_00023`	96.9	100.0 / 100.0	Strict
`TkA01G377350`	`LXL04_003276`	`JCVI_TKOH_00023`	97.7	95.62 / 36.695	Review
`TkA01G377630`	`LXL04_003278`	`JCVI_TKOH_00023`	99.2	88.809 / 17.324	Review
`TkA01G380230`	`LXL04_003265`	`JCVI_TKOH_00023`	97.6	100.0 / 100.0	Strict
`TkA01G380370`	`LXL04_003263`	`JCVI_TKOH_00023`	98.7	100.0 / 100.0	Strict
`TkA01G380380`	`LXL04_003262`	`JCVI_TKOH_00023`	99.7	100.0 / 100.0	Strict
`TkA01G380630`	`LXL04_003258`	`JCVI_TKOH_00023`	76.3	97.849 / 100.0	Review
`TkA01G380640`	`LXL04_003257`	`JCVI_TKOH_00023`	82.1	99.032 / 50.427	Complex
`TkA01G381010`	`LXL04_003255`	`JCVI_TKOH_00023`	85.7	95.059 / 97.356	Review
`TkA01G381230`	`LXL04_003257`	`JCVI_TKOH_00023`	92.7	98.317 / 67.863	Complex
`TkA01G381360`	`LXL04_003257`	`JCVI_TKOH_00023`	72.8	99.15 / 68.376	Complex
`TkA01G381610`	`LXL04_003251`	`JCVI_TKOH_00023`	98.2	100.0 / 89.836	Strict
`TkA01G381620`	`LXL04_003250`	`JCVI_TKOH_00023`	100.0	100.0 / 100.0	Strict
`TkA01G382440`	`LXL04_003249`	`JCVI_TKOH_00023`	100.0	100.0 / 100.0	Review
`TkA01G382740`	`LXL04_003246`	`JCVI_TKOH_00023`	96.4	100.0 / 100.0	Strict
`TkA01G382750`	`LXL04_003245`	`JCVI_TKOH_00023`	98.6	100.0 / 100.0	Strict
`TkA01G382760`	`LXL04_003244`	`JCVI_TKOH_00023`	98.6	100.0 / 99.542	Strict
`TkA01G382790`	`LXL04_003243`	`JCVI_TKOH_00023`	99.3	100.0 / 100.0	Strict
`TkA01G382810`	`LXL04_003242`	`JCVI_TKOH_00023`	99.7	100.0 / 100.0	Strict
`TkA01G382990`	`LXL04_003241`	`JCVI_TKOH_00023`	75.1	100.0 / 93.596	Complex
`TkA01G383110`	`LXL04_003237`	`JCVI_TKOH_00023`	88.7	100.0 / 73.208	Review
`TkA01G383490`	`LXL04_003236`	`JCVI_TKOH_00023`	99.4	99.359 / 42.35	Review
`TkA01G383530`	`LXL04_003235`	`JCVI_TKOH_00023`	97.5	100.0 / 100.0	Strict
`TkA01G383560`	`LXL04_003233`	`JCVI_TKOH_00023`	78.7	97.6 / 29.327	Complex
`TkA01G383590`	`LXL04_003234`	`JCVI_TKOH_00023`	68.0	99.427 / 91.41	Complex
`TkA01G383670`	`LXL04_003234`	`JCVI_TKOH_00023`	100.0	100.0 / 91.63	Complex
`TkA01G383690`	`LXL04_003233`	`JCVI_TKOH_00023`	99.8	100.0 / 100.0	Complex
`TkA01G383760`	`LXL04_003232`	`JCVI_TKOH_00023`	100.0	99.133 / 75.885	Probable
`TkA01G383790`	`LXL04_003230`	`JCVI_TKOH_00023`	55.4	96.721 / 100.0	Complex
`TkA01G383900`	`LXL04_003230`	`JCVI_TKOH_00023`	87.5	100.0 / 100.0	Complex
`TkA01G383920`	`LXL04_003228`	`JCVI_TKOH_00023`	71.9	97.544 / 73.298	Complex
`TkA01G384430`	`LXL04_003226`	`JCVI_TKOH_00023`	74.7	99.631 / 25.685	Complex
`TkA01G384750`	`LXL04_003213`	`JCVI_TKOH_00023`	80.7	94.715 / 25.769	Complex
`TkA01G384790`	`LXL04_003216`	`JCVI_TKOH_00023`	94.6	80.315 / 12.085	Complex
`TkA01G384940`	`LXL04_003223`	`JCVI_TKOH_00023`	92.0	98.681 / 67.754	Complex
`TkA01G384950`	`LXL04_003215`	`JCVI_TKOH_00023`	91.4	74.074 / 24.911	Complex
`TkA01G385570`	`LXL04_003215`	`JCVI_TKOH_00023`	70.4	85.714 / 48.754	Review
`TkA01G385600`	`LXL04_003214`	`JCVI_TKOH_00023`	87.9	100.0 / 100.0	Review
`TkA01G385610`	`LXL04_003208`	`JCVI_TKOH_00023`	98.5	100.0 / 100.0	Strict
`TkA01G385620`	`LXL04_003210`	`JCVI_TKOH_00023`	90.0	99.762 / 49.646	Review
`TkA01G385630`	`LXL04_003207`	`JCVI_TKOH_00023`	81.8	100.0 / 88.0	Review
`TkA01G385800`	`LXL04_003205`	`JCVI_TKOH_00023`	100.0	100.0 / 100.0	Strict
`TkA01G385820`	`LXL04_003204`	`JCVI_TKOH_00023`	100.0	100.0 / 100.0	Strict
`TkA01G385830`	`LXL04_003203`	`JCVI_TKOH_00023`	98.5	95.814 / 100.0	Strict
`TkA01G385890`	`LXL04_003202`	`JCVI_TKOH_00023`	91.0	100.0 / 100.0	Probable
`TkA01G385900`	`LXL04_003200`	`JCVI_TKOH_00023`	62.9	89.676 / 99.687	Complex
`TkA01G385970`	`LXL04_003200`	`JCVI_TKOH_00023`	94.7	100.0 / 100.0	Complex
`TkA01G386430`	`LXL04_003195`	`JCVI_TKOH_00023`	98.5	89.933 / 100.0	Strict
`TkA01G386500`	`LXL04_003194`	`JCVI_TKOH_00023`	98.0	100.0 / 84.521	Strict
`TkA01G386940`	`LXL04_003190`	`JCVI_TKOH_00023`	100.0	100.0 / 100.0	Strict
`TkA01G387040`	`LXL04_003188`	`JCVI_TKOH_00023`	100.0	100.0 / 54.148	Review
`TkA01G387240`	`LXL04_003183`	`JCVI_TKOH_00023`	99.7	100.0 / 100.0	Strict
`TkA01G387250`	`LXL04_003182`	`JCVI_TKOH_00023`	95.5	29.73 / 17.121	Complex
`TkA01G387270`	`LXL04_003181`	`JCVI_TKOH_00023`	83.0	95.431 / 70.588	Review
`TkA01G387470`	`LXL04_003175`	`JCVI_TKOH_00023`	100.0	100.0 / 100.0	Strict
`TkA01G388260`	`LXL04_003172`	`JCVI_TKOH_00023`	100.0	79.464 / 48.108	Complex
`TkA01G388350`	`LXL04_003168`	`JCVI_TKOH_00023`	96.5	100.0 / 52.083	Review
`TkA01G388910`	`LXL04_003165`	`JCVI_TKOH_00023`	74.8	100.0 / 100.0	Complex
`TkA01G389250`	`LXL04_003165`	`JCVI_TKOH_00023`	98.1	100.0 / 63.462	Complex
`TkA01G389290`	`LXL04_003164`	`JCVI_TKOH_00023`	100.0	100.0 / 70.199	Complex
`TkA01G389330`	`LXL04_003161`	`JCVI_TKOH_00023`	100.0	100.0 / 100.0	Strict
`TkA01G390490`	`LXL04_003158`	`JCVI_TKOH_00023`	99.8	100.0 / 100.0	Strict