Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00310

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 288

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00310

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00310 Chr07 81307033-93828302 Chr06 94464106-106885822 mixed High 88 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00310`	Chr07:81307033-93828302	Chr06:94464106-106885822	mixed	288	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 288 · Showing 201–288 · Page 2/2

Previous Download All Anchors TSV

TkA07G359420 → LXL04_029918

94.3%

TkA07G359550 → LXL04_029918

81.4%

TkA07G359930 → LXL04_029918

97.9%

TkA07G359940 → LXL04_029922

63.9%

TkA07G360030 → LXL04_029923

99.5%

TkA07G360040 → LXL04_029924

93.8%

TkA07G360100 → LXL04_029926

87.4%

TkA07G360310 → LXL04_029930

99.1%

TkA07G360320 → LXL04_029931

100.0%

TkA07G360330 → LXL04_029932

98.5%

TkA07G360440 → LXL04_029934

100.0%

TkA07G360460 → LXL04_029935

99.8%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA07G359420`	`LXL04_029918`	`JCVI_TKOH_00310`	94.3	83.032 / 23.398	Complex
`TkA07G359550`	`LXL04_029918`	`JCVI_TKOH_00310`	81.4	83.032 / 23.398	Complex
`TkA07G359930`	`LXL04_029918`	`JCVI_TKOH_00310`	97.9	99.474 / 38.454	Review
`TkA07G359940`	`LXL04_029922`	`JCVI_TKOH_00310`	63.9	35.644 / 23.226	Complex
`TkA07G360030`	`LXL04_029923`	`JCVI_TKOH_00310`	99.5	100.0 / 100.0	Strict
`TkA07G360040`	`LXL04_029924`	`JCVI_TKOH_00310`	93.8	98.919 / 66.102	Review
`TkA07G360100`	`LXL04_029926`	`JCVI_TKOH_00310`	87.4	90.244 / 47.017	Review
`TkA07G360310`	`LXL04_029930`	`JCVI_TKOH_00310`	99.1	100.0 / 100.0	Strict
`TkA07G360320`	`LXL04_029931`	`JCVI_TKOH_00310`	100.0	100.0 / 100.0	Strict
`TkA07G360330`	`LXL04_029932`	`JCVI_TKOH_00310`	98.5	99.49 / 89.862	Strict
`TkA07G360440`	`LXL04_029934`	`JCVI_TKOH_00310`	100.0	100.0 / 100.0	Strict
`TkA07G360460`	`LXL04_029935`	`JCVI_TKOH_00310`	99.8	98.148 / 95.4	Strict
`TkA07G360560`	`LXL04_029936`	`JCVI_TKOH_00310`	87.6	88.356 / 26.434	Complex
`TkA07G360780`	`LXL04_029939`	`JCVI_TKOH_00310`	99.6	100.0 / 100.0	Strict
`TkA07G361050`	`LXL04_029940`	`JCVI_TKOH_00310`	99.4	100.0 / 100.0	Strict
`TkA07G361080`	`LXL04_029942`	`JCVI_TKOH_00310`	97.7	100.0 / 100.0	Strict
`TkA07G361110`	`LXL04_029943`	`JCVI_TKOH_00310`	100.0	99.694 / 95.882	Strict
`TkA07G361130`	`LXL04_029945`	`JCVI_TKOH_00310`	95.8	100.0 / 100.0	Review
`TkA07G361190`	`LXL04_029945`	`JCVI_TKOH_00310`	71.6	100.0 / 100.0	Complex
`TkA07G361570`	`LXL04_029945`	`JCVI_TKOH_00310`	52.4	99.06 / 97.91	Complex
`TkA07G361700`	`LXL04_029947`	`JCVI_TKOH_00310`	100.0	100.0 / 100.0	Complex
`TkA07G361720`	`LXL04_029949`	`JCVI_TKOH_00310`	96.5	100.0 / 100.0	Strict
`TkA07G361730`	`LXL04_029950`	`JCVI_TKOH_00310`	97.3	100.0 / 100.0	Complex
`TkA07G362130`	`LXL04_029950`	`JCVI_TKOH_00310`	96.7	95.833 / 100.0	Complex
`TkA07G362220`	`LXL04_029950`	`JCVI_TKOH_00310`	76.4	99.065 / 21.946	Complex
`TkA07G362230`	`LXL04_029950`	`JCVI_TKOH_00310`	58.5	99.603 / 48.447	Complex
`TkA07G362370`	`LXL04_029952`	`JCVI_TKOH_00310`	90.0	93.985 / 71.865	Complex
`TkA07G362440`	`LXL04_029953`	`JCVI_TKOH_00310`	72.6	100.0 / 100.0	Review
`TkA07G362590`	`LXL04_029955`	`JCVI_TKOH_00310`	100.0	100.0 / 100.0	Strict
`TkA07G362910`	`LXL04_029959`	`JCVI_TKOH_00310`	97.8	100.0 / 100.0	Strict
`TkA07G362920`	`LXL04_029960`	`JCVI_TKOH_00310`	100.0	100.0 / 81.567	Strict
`TkA07G363820`	`LXL04_029969`	`JCVI_TKOH_00310`	100.0	47.604 / 46.417	Review
`TkA07G364470`	`LXL04_029972`	`JCVI_TKOH_00310`	98.6	100.0 / 100.0	Review
`TkA07G365000`	`LXL04_029974`	`JCVI_TKOH_00310`	71.8	87.5 / 74.83	Review
`TkA07G365960`	`LXL04_029981`	`JCVI_TKOH_00310`	98.0	100.0 / 100.0	Review
`TkA07G365970`	`LXL04_029982`	`JCVI_TKOH_00310`	87.0	86.047 / 92.857	Review
`TkA07G366760`	`LXL04_029984`	`JCVI_TKOH_00310`	99.6	94.683 / 67.889	Review
`TkA07G366840`	`LXL04_029986`	`JCVI_TKOH_00310`	97.9	99.58 / 51.133	Review
`TkA07G366920`	`LXL04_029986`	`JCVI_TKOH_00310`	99.4	99.843 / 68.608	Complex
`TkA07G367070`	`LXL04_029987`	`JCVI_TKOH_00310`	99.9	100.0 / 70.833	Complex
`TkA07G367200`	`LXL04_029988`	`JCVI_TKOH_00310`	95.2	100.0 / 100.0	Complex
`TkA07G367280`	`LXL04_029989`	`JCVI_TKOH_00310`	100.0	89.661 / 89.661	Complex
`TkA07G367300`	`LXL04_029990`	`JCVI_TKOH_00310`	100.0	100.0 / 100.0	Complex
`TkA07G367310`	`LXL04_029991`	`JCVI_TKOH_00310`	91.6	100.0 / 100.0	Complex
`TkA07G367400`	`LXL04_029986`	`JCVI_TKOH_00310`	99.1	100.0 / 100.0	Complex
`TkA07G367430`	`LXL04_029987`	`JCVI_TKOH_00310`	99.9	100.0 / 86.458	Complex
`TkA07G367610`	`LXL04_029988`	`JCVI_TKOH_00310`	99.6	100.0 / 100.0	Complex
`TkA07G367630`	`LXL04_029989`	`JCVI_TKOH_00310`	99.7	100.0 / 100.0	Complex
`TkA07G367850`	`LXL04_029991`	`JCVI_TKOH_00310`	91.6	100.0 / 100.0	Complex
`TkA07G368300`	`LXL04_029993`	`JCVI_TKOH_00310`	96.6	100.0 / 100.0	Strict
`TkA07G368600`	`LXL04_029994`	`JCVI_TKOH_00310`	99.8	100.0 / 100.0	Strict
`TkA07G368750`	`LXL04_029996`	`JCVI_TKOH_00310`	83.0	100.0 / 100.0	Complex
`TkA07G369070`	`LXL04_029997`	`JCVI_TKOH_00310`	100.0	100.0 / 100.0	Strict
`TkA07G369410`	`LXL04_029998`	`JCVI_TKOH_00310`	98.8	100.0 / 100.0	Strict
`TkA07G369440`	`LXL04_029999`	`JCVI_TKOH_00310`	100.0	100.0 / 100.0	Strict
`TkA07G369830`	`LXL04_030008`	`JCVI_TKOH_00310`	92.1	100.0 / 100.0	Probable
`TkA07G370090`	`LXL04_030011`	`JCVI_TKOH_00310`	98.2	68.125 / 92.693	Review
`TkA07G370330`	`LXL04_030012`	`JCVI_TKOH_00310`	98.3	92.994 / 43.844	Review
`TkA07G370790`	`LXL04_030016`	`JCVI_TKOH_00310`	99.0	100.0 / 100.0	Complex
`TkA07G370850`	`LXL04_030017`	`JCVI_TKOH_00310`	100.0	100.0 / 100.0	Review
`TkA07G370860`	`LXL04_030019`	`JCVI_TKOH_00310`	99.6	44.094 / 31.854	Review
`TkA07G370940`	`LXL04_030020`	`JCVI_TKOH_00310`	99.3	100.0 / 89.744	Strict
`TkA07G370980`	`LXL04_030021`	`JCVI_TKOH_00310`	100.0	100.0 / 100.0	Complex
`TkA07G371130`	`LXL04_030023`	`JCVI_TKOH_00310`	94.3	98.584 / 91.826	Probable
`TkA07G371210`	`LXL04_030024`	`JCVI_TKOH_00310`	97.5	91.279 / 55.477	Review
`TkA07G371230`	`LXL04_030025`	`JCVI_TKOH_00310`	91.6	92.908 / 63.415	Complex
`TkA07G371340`	`LXL04_030026`	`JCVI_TKOH_00310`	96.4	82.168 / 90.927	Strict
`TkA07G371360`	`LXL04_030027`	`JCVI_TKOH_00310`	99.2	100.0 / 100.0	Strict
`TkA07G371370`	`LXL04_030028`	`JCVI_TKOH_00310`	93.8	100.0 / 100.0	Probable
`TkA07G371640`	`LXL04_030029`	`JCVI_TKOH_00310`	99.6	100.0 / 78.366	Probable
`TkA07G371840`	`LXL04_030031`	`JCVI_TKOH_00310`	96.2	100.0 / 76.409	Probable
`TkA07G372030`	`LXL04_030033`	`JCVI_TKOH_00310`	99.6	97.015 / 51.081	Review
`TkA07G372130`	`LXL04_030034`	`JCVI_TKOH_00310`	98.3	100.0 / 100.0	Strict
`TkA07G372150`	`LXL04_030035`	`JCVI_TKOH_00310`	99.4	100.0 / 100.0	Complex
`TkA07G372200`	`LXL04_030036`	`JCVI_TKOH_00310`	99.4	100.0 / 100.0	Review
`TkA07G372490`	`LXL04_030037`	`JCVI_TKOH_00310`	99.7	100.0 / 100.0	Complex
`TkA07G372500`	`LXL04_030038`	`JCVI_TKOH_00310`	99.2	100.0 / 98.769	Strict
`TkA07G372610`	`LXL04_030039`	`JCVI_TKOH_00310`	100.0	100.0 / 100.0	Review
`TkA07G372630`	`LXL04_030040`	`JCVI_TKOH_00310`	99.0	100.0 / 100.0	Strict
`TkA07G372730`	`LXL04_030042`	`JCVI_TKOH_00310`	91.5	100.0 / 100.0	Probable
`TkA07G372740`	`LXL04_030043`	`JCVI_TKOH_00310`	92.5	100.0 / 100.0	Probable
`TkA07G372790`	`LXL04_030044`	`JCVI_TKOH_00310`	97.2	100.0 / 100.0	Strict
`TkA07G372800`	`LXL04_030045`	`JCVI_TKOH_00310`	99.7	100.0 / 100.0	Complex
`TkA07G372820`	`LXL04_030046`	`JCVI_TKOH_00310`	99.6	92.958 / 84.771	Review
`TkA07G372900`	`LXL04_030046`	`JCVI_TKOH_00310`	99.1	100.0 / 61.101	Complex
`TkA07G372950`	`LXL04_030050`	`JCVI_TKOH_00310`	94.0	100.0 / 83.406	Complex
`TkA07G373540`	`LXL04_030059`	`JCVI_TKOH_00310`	100.0	100.0 / 64.522	Complex
`TkA07G374010`	`LXL04_030061`	`JCVI_TKOH_00310`	99.7	100.0 / 100.0	Strict