Reference Genome Comparison
Shows assembly diagnostics, GFF gene catalogs, and future homology/synteny ID mapping entry points for the TK1151 and OH-1004 rubber dandelion materials.
TK1151 and OH-1004 are different materials of the same species, not a simple version upgrade of one cultivar. This module is a gene homology and synteny ID comparison between two rubber dandelion reference genomes.
Comparison Overview
ID crosswalk rows
84884
Gene-level TK1151 / OH-1004 crosswalk
Synteny blocks
427
JCVI/MCScanX anchored blocks
High-confidence blocks
302
Blocks with strong support
Medium-confidence blocks
125
Kept as secondary evidence
Assembly Summary
TK1151
TK1151TK1151_GWHBCHF00000000
Gap runs: 1917 · Telomere sequences scanned: 9
Both-end telomere support: 0
Evidence: GFF gene catalog + DIAMOND/RBH + JCVI/MCScanX anchors
OH-1004
OH1004OH1004_GCA_047496595.1
Gap runs: 131 · Telomere sequences scanned: 711
Both-end telomere support: 0
Evidence: GFF gene catalog + DIAMOND/RBH + JCVI/MCScanX anchors
Gene Catalog Counts
| Reference | Material | Genes |
|---|---|---|
TK1151 | TK1151 | 45224 |
OH1004 | OH-1004 | 40057 |
Gene Catalog Examples
| Reference | Gene ID | Location | Description |
|---|---|---|---|
| TK1151 | TkAUNG000010 |
GWHBCHF00000001:2719-3172 | TK1151 |
| TK1151 | TkAUNG000020 |
GWHBCHF00000001:3584-5635 | TK1151 |
| TK1151 | TkAUNG000050 |
GWHBCHF00000001:9900-14018 | TK1151 |
| TK1151 | TkAUNG000080 |
GWHBCHF00000001:22628-29341 | TK1151 |
| TK1151 | TkAUNG000100 |
GWHBCHF00000001:41094-42316 | TK1151 |
| TK1151 | TkAUNG000140 |
GWHBCHF00000001:51240-53271 | TK1151 |