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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G453140
Reference: TK1151 Chr: Chr05 Coordinates: 113423065-113424972 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1746 bp · TkA05G453140|TK1151|cDNA

ATGCCTAAAAGAAACGTTGTATCTTGGAACATGATCATTTCCATATTATCCAAGCATGGTCATGTCACAAAGACACTTGGTATGTTCATCGAGATGTGTATTCAAGGTTTTCGACCAAATTCCATGACATATGCCAGTGTTCTCAGTGCTTGTACTAGCATGCATGACCTTCCATGGGGCATCCACTTACATGGGCGAATTGTCCGAATGCAACAACATATCGATGCATATATAGCCACCGCTTTAATCGACATGTATGC...

CDS

Download CDS FASTA

1746 bp · TkA05G453140|TK1151|CDS

ATGCCTAAAAGAAACGTTGTATCTTGGAACATGATCATTTCCATATTATCCAAGCATGGTCATGTCACAAAGACACTTGGTATGTTCATCGAGATGTGTATTCAAGGTTTTCGACCAAATTCCATGACATATGCCAGTGTTCTCAGTGCTTGTACTAGCATGCATGACCTTCCATGGGGCATCCACTTACATGGGCGAATTGTCCGAATGCAACAACATATCGATGCATATATAGCCACCGCTTTAATCGACATGTATGC...

Protein

Download Protein FASTA

581 aa · TkA05G453140|TK1151|PROTEIN

MPKRNVVSWNMIISILSKHGHVTKTLGMFIEMCIQGFRPNSMTYASVLSACTSMHDLPWGIHLHGRIVRMQQHIDAYIATALIDMYAKCGHYKKARQIFNNLKEHNIVSWTSMIGGATHCGNELEAFSLFKQMKEIPIPSDQFTLATILGACCSLKDLHLGTQIHGYSIAIGMESRIPVANALVTMYAKCGDIQNATNAFNLMPHKDIISWTTMITGYSNTGNVEKAREYFDKMPERNIISWNSMLGGYIQNGIWEEGFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G453140
TK1151 IDTkA05G453140
OH-1004 IDLXL04_022244
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)90.900
Protein coverage (%)TK1151 97.074 / OH-1004 44.143
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G453140
LocationChr05:113423065-113424972 (+)
DescriptionSimilar to PHT1-9: Probable inorganic phosphate transporter 1-9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At1g15510 Regulates the RNA editing of the chloroplast transcript accD, and is essential for the early stages of chloroplast biogenesis.
AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03930.x
Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant.2010 · DOI: 10.1007/s11103-010-9616-5
A point mutation in the pentatricopeptide repeat motif of the AtECB2 protein causes delayed chloroplast development.2011 · DOI: 10.1111/j.1744-7909.2011.01030.x
At3g11460 Involved in C-to-U editing of mitochondrial RNA.
MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8.2013 · DOI: 10.1007/s11103-012-0003-2

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022244 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006817 phosphate ion transport Biological Process
GO:0009451 RNA modification Biological Process
GO:1901684 arsenate ion transmembrane transport Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0005315 phosphate transmembrane transporter activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0015293 symporter activity Molecular Function
GO:0015415 ATPase-coupled phosphate ion transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G20860
ath:AT1G76430
ath:AT4G13650
dosa:Os06g0324800
dosa:Os06g0325200
osa:4340904
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.682
Rank 1 · TkA05G453140 · TK1151
Plastid0.183
Rank 2 · TkA05G453140 · TK1151
Nucleus0.047
Rank 3 · TkA05G453140 · TK1151
Cytoplasm0.035
Rank 4 · TkA05G453140 · TK1151
Cell membrane0.007
Rank 5 · TkA05G453140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12854PPR_13-32 aa
PF13041PPR_24-51 aa
PF13812PPR_35-52 aa
PF01535PPR7-36 aa
PF05172RRM_Nup3510-29 aa
PF23276TPR_2411-101 aa
PF17177PPR_long12-103 aa
PF12854PPR_136-49 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G453140PF12854PPR_13323.3e-2691.4
TkA05G453140PF13041PPR_24515e-63209.7
TkA05G453140PF13812PPR_35523e-2382.4
TkA05G453140PF01535PPR7364.2e-56184.1
TkA05G453140PF05172RRM_Nup3510290.3211.7
TkA05G453140PF23276TPR_24111014.5e-0937.0
TkA05G453140PF17177PPR_long121030.000221.5
TkA05G453140PF12854PPR_136493.3e-2691.4
TkA05G453140PF01535PPR43634.2e-56184.1
TkA05G453140PF17177PPR_long441940.000221.5
TkA05G453140PF18768RNPP_C641030.001219.1
TkA05G453140PF29070MSC6_N661213e-0833.9
TkA05G453140PF09295ChAPs682050.06213.0
TkA05G453140PF17049AEP1691131.2e-0525.3
TkA05G453140PF00637Clathrin711040.01715.6
TkA05G453140PF10553MSV199711100.1413.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365034.600%Swiss-ProtMedium
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic31.600%Swiss-ProtMedium
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317031.900%Swiss-ProtMedium
Q9M9E2Arabidopsis thalianasp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic30.200%Swiss-ProtMedium
Q9CAY1Arabidopsis thalianasp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial29.500%Swiss-ProtLow

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