Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`TkA05G453140`
Query reference	TK1151
Location	Chr05:113423065-113424972 (+)
Description	Similar to PHT1-9: Probable inorganic phosphate transporter 1-9 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_022244 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

This query returns 11 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g13650`	Pentatricopeptide repeat-containing protein At4g13650.	No verified direct reference in this release
`At1g11290`	Involved in multiple sites RNA editing events in chloroplasts.	Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
`At4g33170`	Pentatricopeptide repeat-containing protein At4g33170.	No verified direct reference in this release
`At1g15510`	Regulates the RNA editing of the chloroplast transcript accD, and is essential for the early stages of chloroplast biogenesis.	AtECB2, a pentatricopeptide repeat protein, is required for chloroplast transcript accD RNA editing and early chloroplast biogenesis in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03930.x Editing of accD and ndhF chloroplast transcripts is partially affected in the Arabidopsis vanilla cream1 mutant.2010 · DOI: 10.1007/s11103-010-9616-5 A point mutation in the pentatricopeptide repeat motif of the AtECB2 protein causes delayed chloroplast development.2011 · DOI: 10.1111/j.1744-7909.2011.01030.x
`At3g11460`	Involved in C-to-U editing of mitochondrial RNA.	MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8.2013 · DOI: 10.1007/s11103-012-0003-2

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006817	phosphate ion transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.306; coverage=37.643; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009451	RNA modification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.459; coverage=61.357; evalue=1.73e-172; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901684	arsenate ion transmembrane transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.306; coverage=37.643; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.459; coverage=61.357; evalue=1.73e-172; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.306; coverage=37.643; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016020	membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.048; coverage=37.5; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003729	mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.459; coverage=61.357; evalue=1.73e-172; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005315	phosphate transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.306; coverage=37.643; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.459; coverage=61.357; evalue=1.73e-172; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015293	symporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.306; coverage=37.643; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015415	ATPase-coupled phosphate ion transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.306; coverage=37.643; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G20860	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.048; coverage=37.5; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G76430	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=57.306; coverage=37.643; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G13650	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.459; coverage=61.357; evalue=1.73e-172	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0324800	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.789; coverage=37.929; evalue=1.25e-173	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0325200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.571; coverage=37.5; evalue=3.45e-173	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4340904	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=51.789; coverage=37.929; evalue=1.25e-173	UniProtKB/Swiss-Prot DAT 2026 current_release