Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00306

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 58

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00306

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00306 Chr07 44870776-56809175 Chr06 50217477-66513175 mixed High 58 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00306`	Chr07:44870776-56809175	Chr06:50217477-66513175	mixed	58	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 58 · Showing 1–58 · Page 1/1

Download All Anchors TSV

TkA07G175110 → LXL04_028628

99.8%

TkA07G175550 → LXL04_028631

97.6%

TkA07G176520 → LXL04_028633

99.5%

TkA07G176530 → LXL04_028634

98.4%

TkA07G176580 → LXL04_028636

96.3%

TkA07G178140 → LXL04_028639

100.0%

TkA07G178650 → LXL04_028640

99.3%

TkA07G178680 → LXL04_028641

100.0%

TkA07G182860 → LXL04_028646

87.3%

TkA07G183090 → LXL04_028647

99.3%

TkA07G185410 → LXL04_028648

99.9%

TkA07G187510 → LXL04_028670

99.4%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA07G175110`	`LXL04_028628`	`JCVI_TKOH_00306`	99.8	100.0 / 100.0	Strict
`TkA07G175550`	`LXL04_028631`	`JCVI_TKOH_00306`	97.6	100.0 / 100.0	Complex
`TkA07G176520`	`LXL04_028633`	`JCVI_TKOH_00306`	99.5	97.978 / 74.15	Probable
`TkA07G176530`	`LXL04_028634`	`JCVI_TKOH_00306`	98.4	90.099 / 99.454	Strict
`TkA07G176580`	`LXL04_028636`	`JCVI_TKOH_00306`	96.3	96.41 / 75.6	Probable
`TkA07G178140`	`LXL04_028639`	`JCVI_TKOH_00306`	100.0	100.0 / 100.0	Strict
`TkA07G178650`	`LXL04_028640`	`JCVI_TKOH_00306`	99.3	100.0 / 100.0	Strict
`TkA07G178680`	`LXL04_028641`	`JCVI_TKOH_00306`	100.0	97.268 / 90.355	Strict
`TkA07G182860`	`LXL04_028646`	`JCVI_TKOH_00306`	87.3	94.118 / 85.271	Review
`TkA07G183090`	`LXL04_028647`	`JCVI_TKOH_00306`	99.3	100.0 / 100.0	Review
`TkA07G185410`	`LXL04_028648`	`JCVI_TKOH_00306`	99.9	99.717 / 90.102	Strict
`TkA07G187510`	`LXL04_028670`	`JCVI_TKOH_00306`	99.4	79.426 / 60.145	Review
`TkA07G187520`	`LXL04_028671`	`JCVI_TKOH_00306`	66.3	100.0 / 35.817	Review
`TkA07G189610`	`LXL04_028696`	`JCVI_TKOH_00306`	78.9	100.0 / 100.0	Review
`TkA07G189630`	`LXL04_028697`	`JCVI_TKOH_00306`	99.8	100.0 / 92.598	Strict
`TkA07G190040`	`LXL04_028699`	`JCVI_TKOH_00306`	99.4	100.0 / 100.0	Strict
`TkA07G193430`	`LXL04_028713`	`JCVI_TKOH_00306`	98.7	99.371 / 53.925	Review
`TkA07G193560`	`LXL04_028714`	`JCVI_TKOH_00306`	98.3	100.0 / 100.0	Strict
`TkA07G194130`	`LXL04_028716`	`JCVI_TKOH_00306`	100.0	100.0 / 100.0	Strict
`TkA07G194810`	`LXL04_028722`	`JCVI_TKOH_00306`	100.0	100.0 / 100.0	Complex
`TkA07G198400`	`LXL04_028726`	`JCVI_TKOH_00306`	100.0	100.0 / 100.0	Strict
`TkA07G198570`	`LXL04_028727`	`JCVI_TKOH_00306`	99.2	100.0 / 45.385	Review
`TkA07G198580`	`LXL04_028727`	`JCVI_TKOH_00306`	100.0	62.857 / 33.846	Complex
`TkA07G198820`	`LXL04_028730`	`JCVI_TKOH_00306`	100.0	100.0 / 100.0	Strict
`TkA07G198950`	`LXL04_028732`	`JCVI_TKOH_00306`	78.8	100.0 / 100.0	Review
`TkA07G199080`	`LXL04_028733`	`JCVI_TKOH_00306`	100.0	99.745 / 98.737	Complex
`TkA07G199270`	`LXL04_028734`	`JCVI_TKOH_00306`	33.3	99.344 / 92.276	Complex
`TkA07G199840`	`LXL04_028735`	`JCVI_TKOH_00306`	78.4	93.6 / 56.627	Complex
`TkA07G200870`	`LXL04_028739`	`JCVI_TKOH_00306`	85.2	100.0 / 64.706	Complex
`TkA07G202030`	`LXL04_028741`	`JCVI_TKOH_00306`	99.0	100.0 / 100.0	Strict
`TkA07G202700`	`LXL04_028743`	`JCVI_TKOH_00306`	100.0	100.0 / 100.0	Strict
`TkA07G203920`	`LXL04_028751`	`JCVI_TKOH_00306`	100.0	100.0 / 100.0	Complex
`TkA07G203940`	`LXL04_028752`	`JCVI_TKOH_00306`	100.0	87.556 / 56.286	Review
`TkA07G206720`	`LXL04_028768`	`JCVI_TKOH_00306`	92.0	98.214 / 45.785	Review
`TkA07G207660`	`LXL04_028754`	`JCVI_TKOH_00306`	55.1	98.551 / 27.514	Complex
`TkA07G207880`	`LXL04_028756`	`JCVI_TKOH_00306`	100.0	93.783 / 100.0	Strict
`TkA07G207910`	`LXL04_028757`	`JCVI_TKOH_00306`	67.8	97.872 / 78.125	Review
`TkA07G208000`	`LXL04_028759`	`JCVI_TKOH_00306`	85.6	100.0 / 100.0	Review
`TkA07G208220`	`LXL04_028761`	`JCVI_TKOH_00306`	79.1	100.0 / 100.0	Review
`TkA07G210010`	`LXL04_028764`	`JCVI_TKOH_00306`	99.5	100.0 / 76.694	Complex
`TkA07G210040`	`LXL04_028766`	`JCVI_TKOH_00306`	100.0	100.0 / 83.333	Review
`TkA07G211150`	`LXL04_028771`	`JCVI_TKOH_00306`	97.8	99.567 / 74.675	Complex
`TkA07G211250`	`LXL04_028772`	`JCVI_TKOH_00306`	91.8	91.235 / 80.858	Complex
`TkA07G213280`	`LXL04_028778`	`JCVI_TKOH_00306`	73.5	74.654 / 100.0	Complex
`TkA07G213750`	`LXL04_028783`	`JCVI_TKOH_00306`	98.8	98.098 / 75.361	Probable
`TkA07G214050`	`LXL04_028786`	`JCVI_TKOH_00306`	98.7	96.721 / 20.645	Review
`TkA07G214060`	`LXL04_028786`	`JCVI_TKOH_00306`	90.9	96.016 / 23.084	Complex
`TkA07G214680`	`LXL04_028789`	`JCVI_TKOH_00306`	100.0	92.199 / 87.248	Review
`TkA07G215890`	`LXL04_028791`	`JCVI_TKOH_00306`	99.8	100.0 / 100.0	Strict
`TkA07G216800`	`LXL04_028794`	`JCVI_TKOH_00306`	100.0	98.507 / 33.545	Review
`TkA07G217360`	`LXL04_028792`	`JCVI_TKOH_00306`	90.6	54.299 / 16.52	Complex
`TkA07G220850`	`LXL04_028800`	`JCVI_TKOH_00306`	90.3	100.0 / 27.614	Review
`TkA07G220860`	`LXL04_028800`	`JCVI_TKOH_00306`	94.8	100.0 / 25.603	Complex
`TkA07G223350`	`LXL04_028806`	`JCVI_TKOH_00306`	94.0	63.359 / 58.042	Review
`TkA07G226160`	`LXL04_028811`	`JCVI_TKOH_00306`	100.0	100.0 / 76.037	Complex
`TkA07G226600`	`LXL04_028816`	`JCVI_TKOH_00306`	63.2	100.0 / 80.297	Review
`TkA07G226620`	`LXL04_028817`	`JCVI_TKOH_00306`	100.0	100.0 / 100.0	Strict
`TkA07G226650`	`LXL04_028818`	`JCVI_TKOH_00306`	100.0	99.781 / 95.789	Strict