Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00286

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 29

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00286

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00286 Chr06 104347113-106547170 Chr05 12893631-16152104 mixed High 29 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00286`	Chr06:104347113-106547170	Chr05:12893631-16152104	mixed	29	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 29 · Showing 1–29 · Page 1/1

Download All Anchors TSV

TkA06G421690 → LXL04_022970

99.2%

TkA06G421770 → LXL04_022970

99.2%

TkA06G422150 → LXL04_022969

98.0%

TkA06G422450 → LXL04_022961

99.8%

TkA06G423470 → LXL04_022958

99.0%

TkA06G425250 → LXL04_022947

99.7%

TkA06G425360 → LXL04_022945

100.0%

TkA06G425410 → LXL04_022944

98.5%

TkA06G425420 → LXL04_022943

84.2%

TkA06G425740 → LXL04_022937

91.4%

TkA06G426770 → LXL04_022932

87.0%

TkA06G426780 → LXL04_022931

99.6%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA06G421690`	`LXL04_022970`	`JCVI_TKOH_00286`	99.2	100.0 / 78.107	Complex
`TkA06G421770`	`LXL04_022970`	`JCVI_TKOH_00286`	99.2	100.0 / 78.107	Complex
`TkA06G422150`	`LXL04_022969`	`JCVI_TKOH_00286`	98.0	95.327 / 69.863	Complex
`TkA06G422450`	`LXL04_022961`	`JCVI_TKOH_00286`	99.8	95.985 / 69.485	Review
`TkA06G423470`	`LXL04_022958`	`JCVI_TKOH_00286`	99.0	94.258 / 20.913	Review
`TkA06G425250`	`LXL04_022947`	`JCVI_TKOH_00286`	99.7	100.0 / 100.0	Strict
`TkA06G425360`	`LXL04_022945`	`JCVI_TKOH_00286`	100.0	100.0 / 16.691	Review
`TkA06G425410`	`LXL04_022944`	`JCVI_TKOH_00286`	98.5	100.0 / 91.741	Strict
`TkA06G425420`	`LXL04_022943`	`JCVI_TKOH_00286`	84.2	100.0 / 100.0	Complex
`TkA06G425740`	`LXL04_022937`	`JCVI_TKOH_00286`	91.4	95.395 / 26.962	Complex
`TkA06G426770`	`LXL04_022932`	`JCVI_TKOH_00286`	87.0	100.0 / 100.0	Review
`TkA06G426780`	`LXL04_022931`	`JCVI_TKOH_00286`	99.6	100.0 / 96.241	Strict
`TkA06G426830`	`LXL04_022930`	`JCVI_TKOH_00286`	98.2	99.606 / 28.379	Review
`TkA06G427130`	`LXL04_022926`	`JCVI_TKOH_00286`	49.7	38.393 / 71.782	Complex
`TkA06G427280`	`LXL04_022926`	`JCVI_TKOH_00286`	94.1	100.0 / 100.0	Complex
`TkA06G427540`	`LXL04_022925`	`JCVI_TKOH_00286`	91.9	100.0 / 100.0	Probable
`TkA06G427570`	`LXL04_022924`	`JCVI_TKOH_00286`	100.0	100.0 / 100.0	Review
`TkA06G427600`	`LXL04_022923`	`JCVI_TKOH_00286`	99.5	96.916 / 26.036	Review
`TkA06G427620`	`LXL04_022922`	`JCVI_TKOH_00286`	90.5	99.563 / 90.323	Probable
`TkA06G427910`	`LXL04_022919`	`JCVI_TKOH_00286`	100.0	100.0 / 88.095	Complex
`TkA06G428000`	`LXL04_022917`	`JCVI_TKOH_00286`	99.5	100.0 / 100.0	Strict
`TkA06G428050`	`LXL04_022916`	`JCVI_TKOH_00286`	99.1	100.0 / 100.0	Complex
`TkA06G428060`	`LXL04_022919`	`JCVI_TKOH_00286`	32.4	100.0 / 83.333	Complex
`TkA06G428200`	`LXL04_022915`	`JCVI_TKOH_00286`	99.4	100.0 / 96.515	Strict
`TkA06G428570`	`LXL04_022912`	`JCVI_TKOH_00286`	84.8	99.688 / 83.073	Review
`TkA06G429900`	`LXL04_022905`	`JCVI_TKOH_00286`	100.0	100.0 / 100.0	Strict
`TkA06G430190`	`LXL04_022901`	`JCVI_TKOH_00286`	99.8	100.0 / 100.0	Strict
`TkA06G430320`	`LXL04_022902`	`JCVI_TKOH_00286`	99.6	100.0 / 100.0	Strict
`TkA06G430660`	`LXL04_022904`	`JCVI_TKOH_00286`	99.6	100.0 / 91.216	Strict