Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00106

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 45

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00106

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00106 Chr02 66122487-67815709 Chr06 92025766-93984396 mixed High 45 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00106`	Chr02:66122487-67815709	Chr06:92025766-93984396	mixed	45	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 45 · Showing 1–45 · Page 1/1

Download All Anchors TSV

TkA02G259060 → LXL04_029563

99.1%

TkA02G259240 → LXL04_029562

100.0%

TkA02G260200 → LXL04_029560

100.0%

TkA02G260330 → LXL04_029559

95.3%

TkA02G260340 → LXL04_029558

99.2%

TkA02G260430 → LXL04_029557

100.0%

TkA02G260560 → LXL04_029556

99.1%

TkA02G260680 → LXL04_029555

98.7%

TkA02G261040 → LXL04_029551

99.4%

TkA02G261250 → LXL04_029548

79.1%

TkA02G261260 → LXL04_029547

99.6%

TkA02G261270 → LXL04_029546

96.1%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA02G259060`	`LXL04_029563`	`JCVI_TKOH_00106`	99.1	100.0 / 100.0	Probable
`TkA02G259240`	`LXL04_029562`	`JCVI_TKOH_00106`	100.0	96.389 / 48.233	Review
`TkA02G260200`	`LXL04_029560`	`JCVI_TKOH_00106`	100.0	100.0 / 100.0	Complex
`TkA02G260330`	`LXL04_029559`	`JCVI_TKOH_00106`	95.3	91.034 / 91.973	Probable
`TkA02G260340`	`LXL04_029558`	`JCVI_TKOH_00106`	99.2	80.317 / 73.623	Complex
`TkA02G260430`	`LXL04_029557`	`JCVI_TKOH_00106`	100.0	100.0 / 100.0	Probable
`TkA02G260560`	`LXL04_029556`	`JCVI_TKOH_00106`	99.1	100.0 / 100.0	Probable
`TkA02G260680`	`LXL04_029555`	`JCVI_TKOH_00106`	98.7	100.0 / 100.0	Review
`TkA02G261040`	`LXL04_029551`	`JCVI_TKOH_00106`	99.4	100.0 / 100.0	Probable
`TkA02G261250`	`LXL04_029548`	`JCVI_TKOH_00106`	79.1	99.153 / 49.672	Review
`TkA02G261260`	`LXL04_029547`	`JCVI_TKOH_00106`	99.6	100.0 / 65.242	Complex
`TkA02G261270`	`LXL04_029546`	`JCVI_TKOH_00106`	96.1	100.0 / 84.536	Probable
`TkA02G261280`	`LXL04_029545`	`JCVI_TKOH_00106`	91.7	100.0 / 54.242	Review
`TkA02G261290`	`LXL04_029546`	`JCVI_TKOH_00106`	83.9	96.622 / 29.485	Complex
`TkA02G261520`	`LXL04_029541`	`JCVI_TKOH_00106`	100.0	100.0 / 76.259	Probable
`TkA02G261550`	`LXL04_029539`	`JCVI_TKOH_00106`	90.7	100.0 / 100.0	Probable
`TkA02G261560`	`LXL04_029538`	`JCVI_TKOH_00106`	98.5	100.0 / 100.0	Probable
`TkA02G261600`	`LXL04_029537`	`JCVI_TKOH_00106`	98.7	100.0 / 100.0	Probable
`TkA02G261820`	`LXL04_029531`	`JCVI_TKOH_00106`	95.3	100.0 / 100.0	Complex
`TkA02G262160`	`LXL04_029529`	`JCVI_TKOH_00106`	83.2	83.209 / 72.34	Complex
`TkA02G262410`	`LXL04_029526`	`JCVI_TKOH_00106`	99.4	100.0 / 100.0	Complex
`TkA02G262470`	`LXL04_029525`	`JCVI_TKOH_00106`	98.2	80.292 / 29.73	Review
`TkA02G262760`	`LXL04_029521`	`JCVI_TKOH_00106`	97.7	89.773 / 85.683	Complex
`TkA02G263140`	`LXL04_029520`	`JCVI_TKOH_00106`	100.0	100.0 / 100.0	Review
`TkA02G263150`	`LXL04_029519`	`JCVI_TKOH_00106`	78.7	100.0 / 100.0	Complex
`TkA02G263260`	`LXL04_029518`	`JCVI_TKOH_00106`	100.0	100.0 / 100.0	Review
`TkA02G263450`	`LXL04_029517`	`JCVI_TKOH_00106`	98.7	100.0 / 100.0	Complex
`TkA02G263530`	`LXL04_029515`	`JCVI_TKOH_00106`	100.0	100.0 / 100.0	Complex
`TkA02G263540`	`LXL04_029513`	`JCVI_TKOH_00106`	100.0	100.0 / 100.0	Review
`TkA02G263550`	`LXL04_029512`	`JCVI_TKOH_00106`	99.3	99.815 / 93.588	Probable
`TkA02G263700`	`LXL04_029511`	`JCVI_TKOH_00106`	99.8	100.0 / 100.0	Complex
`TkA02G263710`	`LXL04_029510`	`JCVI_TKOH_00106`	91.0	100.0 / 100.0	Review
`TkA02G263760`	`LXL04_029509`	`JCVI_TKOH_00106`	100.0	100.0 / 81.003	Probable
`TkA02G263770`	`LXL04_029508`	`JCVI_TKOH_00106`	99.8	100.0 / 100.0	Probable
`TkA02G263840`	`LXL04_029507`	`JCVI_TKOH_00106`	99.7	100.0 / 100.0	Probable
`TkA02G263950`	`LXL04_029506`	`JCVI_TKOH_00106`	100.0	46.528 / 26.693	Review
`TkA02G264160`	`LXL04_029503`	`JCVI_TKOH_00106`	99.4	96.25 / 90.588	Review
`TkA02G264200`	`LXL04_029502`	`JCVI_TKOH_00106`	95.6	100.0 / 100.0	Complex
`TkA02G264230`	`LXL04_029501`	`JCVI_TKOH_00106`	99.9	100.0 / 94.02	Complex
`TkA02G264340`	`LXL04_029500`	`JCVI_TKOH_00106`	99.9	100.0 / 100.0	Complex
`TkA02G264690`	`LXL04_029499`	`JCVI_TKOH_00106`	100.0	100.0 / 100.0	Complex
`TkA02G264710`	`LXL04_029498`	`JCVI_TKOH_00106`	99.2	100.0 / 100.0	Complex
`TkA02G264720`	`LXL04_029497`	`JCVI_TKOH_00106`	98.5	100.0 / 36.496	Review
`TkA02G264730`	`LXL04_029497`	`JCVI_TKOH_00106`	100.0	99.682 / 57.117	Review
`TkA02G264760`	`LXL04_029496`	`JCVI_TKOH_00106`	99.6	100.0 / 100.0	Complex