Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1386 bp · LXL04_029521|LXL04_029521|OH1004|cDNA
ATGGAAATCAAACCACTCAAGTCTCAACCATGTGTTCCAAACCTTACAACgtattggtttaggcttttaTTTATGGCGGGAAAGTTAACACTGTTAAGTCTTACCCCTCTTTCTTTTCGAGCCCTAATTTTCGTTTCTCTATCTCCCCACGCTTTCGTTTTCCTCAAATTCACGATATCTTCTTCCTTAGCAATGTACAAATTTTCGACTATCTTATGGTTCGAACTAAACATTTTCATCTTTGCGTTTCCAGAAACAAC...
1386 bp · LXL04_029521|LXL04_029521|OH1004|CDS
ATGGAAATCAAACCACTCAAGTCTCAACCATGTGTTCCAAACCTTACAACGTATTGGTTTAGGCTTTTATTTATGGCGGGAAAGTTAACACTGTTAAGTCTTACCCCTCTTTCTTTTCGAGCCCTAATTTTCGTTTCTCTATCTCCCCACGCTTTCGTTTTCCTCAAATTCACGATATCTTCTTCCTTAGCAATGTACAAATTTTCGACTATCTTATGGTTCGAACTAAACATTTTCATCTTTGCGTTTCCAGAAACAAC...
Protein
Download Protein FASTA461 aa · LXL04_029521|LXL04_029521|OH1004|PROTEIN
MEIKPLKSQPCVPNLTTYWFRLLFMAGKLTLLSLTPLSFRALIFVSLSPHAFVFLKFTISSSLAMYKFSTILWFELNIFIFAFPETTLSFHRFNMADVFEDETEQTVSLNEYLDEVEDQELEADLVLGGDEGKECTYVKGYMKRQAIFSCLTCTPDGNAGVCTACSLSCHDGHEIIELWTKRKFKCDCGNSKFGEFYCKLLASKDIENEENSYNHNFKGKYCTCSRPYPDPEAEEQVEMIQCCICEDWFHEEHVSLNNEV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_029521 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_029521 |
|---|---|
| Location | Chr06:92890754-92893034 (-) |
| Description | Similar to UBR7: Putative E3 ubiquitin-protein ligase UBR7 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0010498 proteasomal protein catabolic process Biological Process GO:0016567 protein ubiquitination Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0032991 protein-containing complex Cellular Component GO:0008270 zinc ion binding Molecular Function GO:0061630 ubiquitin protein ligase activity Molecular Function |
| KEGG gene cross-reference | ddi:DDB_G0292022 hsa:55148 mmu:66622 spo:2540600 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02207.26zf-UBR135-199 aaPF30811.1PHD_UBR7-like216-290 aaPF31011.1UBR7_C403-460 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_029521 | PF02207.26 | zf-UBR | 135 | 199 | 8.2e-13 | 49.0 |
| LXL04_029521 | PF30811.1 | PHD_UBR7-like | 216 | 290 | 1.9e-24 | 86.1 |
| LXL04_029521 | PF31011.1 | UBR7_C | 403 | 460 | 2.4e-22 | 79.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.