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Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
MaterialAssemblyGenesGap runsTelomere scan
TK1151 TK1151_GWHBCHF00000000 45224 1917 0/9
OH-1004 OH1004_GCA_047496595.1 40057 131 0/711

Query Interpretation

Input ID
JCVI_TKOH_00083
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 92
crosswalk / blocks / anchors
Best block: JCVI_TKOH_00083

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00083 Chr02 44222178-49716191 Chr03 108855497-115713057 mixed High 92 anchors
Chr02 44222178-49716191 Chr03 108855497-115713057 JCVI_TKOH_00083 · 92 gene pairs TkA02G172170 | LXL04_016213 | 99.1% | RBH_high_identity_coverage_synteny | Strict TkA02G172270 | LXL04_016216 | 87.6% | multi_source_to_OH1004 | Complex TkA02G172310 | LXL04_016217 | 94.8% | multi_source_to_OH1004 | Complex TkA02G172360 | LXL04_016217 | 95.1% | multi_source_to_OH1004 | Complex TkA02G172530 | LXL04_016217 | 98.1% | multi_source_to_OH1004 | Complex TkA02G172620 | LXL04_016216 | 71.9% | multi_source_to_OH1004 | Complex TkA02G172710 | LXL04_016217 | 94.9% | multi_source_to_OH1004 | Complex TkA02G172930 | LXL04_016217 | 97.1% | multi_source_to_OH1004 | Complex TkA02G173360 | LXL04_016217 | 95.9% | multi_source_to_OH1004 | Complex TkA02G173580 | LXL04_016216 | 93.5% | multi_source_to_OH1004 | Complex TkA02G173610 | LXL04_016217 | 98.2% | sequence_supported_annotation_or_model_conflict | Review TkA02G173760 | LXL04_016216 | 87.6% | multi_source_to_OH1004 | Complex
High Medium Other Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

BlockQuery locationTarget locationOrientationCurrent mapped anchorsConfidenceNote
JCVI_TKOH_00083 Chr02:44222178-49716191 Chr03:108855497-115713057 mixed 92 High Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 92 · Showing 1–92 · Page 1/1

Download All Anchors TSV
TkA02G172170 → LXL04_016213
99.1%
TkA02G172270 → LXL04_016216
87.6%
TkA02G172310 → LXL04_016217
94.8%
TkA02G172360 → LXL04_016217
95.1%
TkA02G172530 → LXL04_016217
98.1%
TkA02G172620 → LXL04_016216
71.9%
TkA02G172710 → LXL04_016217
94.9%
TkA02G172930 → LXL04_016217
97.1%
TkA02G173360 → LXL04_016217
95.9%
TkA02G173580 → LXL04_016216
93.5%
TkA02G173610 → LXL04_016217
98.2%
TkA02G173760 → LXL04_016216
87.6%
TK1151 geneOH-1004 geneBlockIdentityCoverageConfidence
TkA02G172170LXL04_016213JCVI_TKOH_0008399.1100.0 / 100.0Strict
TkA02G172270LXL04_016216JCVI_TKOH_0008387.699.224 / 57.828Complex
TkA02G172310LXL04_016217JCVI_TKOH_0008394.864.0 / 17.455Complex
TkA02G172360LXL04_016217JCVI_TKOH_0008395.171.93 / 67.091Complex
TkA02G172530LXL04_016217JCVI_TKOH_0008398.198.526 / 85.091Complex
TkA02G172620LXL04_016216JCVI_TKOH_0008371.989.558 / 52.398Complex
TkA02G172710LXL04_016217JCVI_TKOH_0008394.9100.0 / 75.091Complex
TkA02G172930LXL04_016217JCVI_TKOH_0008397.1100.0 / 75.091Complex
TkA02G173360LXL04_016217JCVI_TKOH_0008395.9100.0 / 66.545Complex
TkA02G173580LXL04_016216JCVI_TKOH_0008393.593.697 / 49.593Complex
TkA02G173610LXL04_016217JCVI_TKOH_0008398.297.193 / 50.364Review
TkA02G173760LXL04_016216JCVI_TKOH_0008387.685.922 / 82.081Complex
TkA02G173770LXL04_016217JCVI_TKOH_0008392.7100.0 / 75.091Complex
TkA02G173890LXL04_016216JCVI_TKOH_0008380.579.372 / 81.81Complex
TkA02G173960LXL04_016222JCVI_TKOH_0008396.9100.0 / 100.0Strict
TkA02G173970LXL04_016221JCVI_TKOH_0008398.2100.0 / 100.0Complex
TkA02G174370LXL04_016212JCVI_TKOH_0008397.3100.0 / 100.0Strict
TkA02G174600LXL04_016211JCVI_TKOH_0008392.4100.0 / 100.0Probable
TkA02G174610LXL04_016210JCVI_TKOH_00083100.0100.0 / 72.115Probable
TkA02G174660LXL04_016205JCVI_TKOH_0008397.398.974 / 81.472Complex
TkA02G174700LXL04_016204JCVI_TKOH_0008368.345.935 / 79.167Review
TkA02G174710LXL04_016203JCVI_TKOH_0008398.8100.0 / 78.585Probable
TkA02G174780LXL04_016201JCVI_TKOH_0008384.893.64 / 57.178Review
TkA02G174790LXL04_016200JCVI_TKOH_0008399.4100.0 / 100.0Strict
TkA02G174860LXL04_016199JCVI_TKOH_0008399.5100.0 / 100.0Complex
TkA02G175270LXL04_016198JCVI_TKOH_0008398.7100.0 / 100.0Strict
TkA02G175810LXL04_016197JCVI_TKOH_0008397.0100.0 / 99.802Strict
TkA02G176300LXL04_016193JCVI_TKOH_0008360.4100.0 / 100.0Review
TkA02G177000LXL04_016190JCVI_TKOH_00083100.0100.0 / 100.0Strict
TkA02G177400LXL04_016188JCVI_TKOH_0008398.099.814 / 36.63Review
TkA02G177410LXL04_016188JCVI_TKOH_0008395.099.492 / 40.587Review
TkA02G177870LXL04_016188JCVI_TKOH_0008397.8100.0 / 36.698Review
TkA02G177880LXL04_016188JCVI_TKOH_0008398.3100.0 / 41.132Review
TkA02G178830LXL04_016185JCVI_TKOH_0008387.6100.0 / 67.188Complex
TkA02G178870LXL04_016183JCVI_TKOH_0008397.999.752 / 89.415Complex
TkA02G180040LXL04_016178JCVI_TKOH_0008399.8100.0 / 91.313Complex
TkA02G180050LXL04_016177JCVI_TKOH_0008396.5100.0 / 98.295Strict
TkA02G180130LXL04_016176JCVI_TKOH_0008392.289.305 / 16.12Complex
TkA02G180430LXL04_016171JCVI_TKOH_0008396.9100.0 / 40.977Review
TkA02G180440LXL04_016171JCVI_TKOH_00083100.0100.0 / 36.499Review
TkA02G180530LXL04_016168JCVI_TKOH_0008398.999.912 / 99.912Complex
TkA02G181370LXL04_016166JCVI_TKOH_0008398.3100.0 / 43.564Review
TkA02G181550LXL04_016163JCVI_TKOH_0008395.199.507 / 91.261Complex
TkA02G182800LXL04_016159JCVI_TKOH_0008397.795.964 / 100.0Complex
TkA02G183260LXL04_016157JCVI_TKOH_0008396.3100.0 / 97.097Complex
TkA02G183420LXL04_016156JCVI_TKOH_0008398.697.759 / 99.474Strict
TkA02G184320LXL04_016152JCVI_TKOH_0008399.793.002 / 87.848Complex
TkA02G184410LXL04_016151JCVI_TKOH_0008398.4100.0 / 100.0Complex
TkA02G184420LXL04_016150JCVI_TKOH_0008397.3100.0 / 100.0Review
TkA02G184450LXL04_016148JCVI_TKOH_0008379.996.453 / 100.0Complex
TkA02G184690LXL04_016144JCVI_TKOH_0008399.7100.0 / 53.635Review
TkA02G184720LXL04_016143JCVI_TKOH_00083100.0100.0 / 94.659Complex
TkA02G184860LXL04_016141JCVI_TKOH_0008398.893.275 / 88.115Complex
TkA02G184870LXL04_016140JCVI_TKOH_00083100.0100.0 / 83.902Complex
TkA02G185800LXL04_016137JCVI_TKOH_0008398.7100.0 / 44.898Review
TkA02G186130LXL04_016134JCVI_TKOH_00083100.0100.0 / 100.0Strict
TkA02G186140LXL04_016133JCVI_TKOH_00083100.0100.0 / 100.0Complex
TkA02G186330LXL04_016131JCVI_TKOH_0008396.994.152 / 43.869Review
TkA02G186580LXL04_016129JCVI_TKOH_0008396.296.581 / 83.846Strict
TkA02G187600LXL04_016128JCVI_TKOH_00083100.031.579 / 23.645Review
TkA02G187810LXL04_016127JCVI_TKOH_00083100.0100.0 / 80.59Complex
TkA02G187830LXL04_016125JCVI_TKOH_00083100.064.0 / 64.0Complex
TkA02G188180LXL04_016122JCVI_TKOH_0008398.0100.0 / 92.835Complex
TkA02G188190LXL04_016121JCVI_TKOH_0008399.3100.0 / 100.0Complex
TkA02G189240LXL04_016119JCVI_TKOH_0008398.5100.0 / 100.0Complex
TkA02G189310LXL04_016118JCVI_TKOH_0008398.9100.0 / 100.0Review
TkA02G189610LXL04_016117JCVI_TKOH_00083100.0100.0 / 100.0Complex
TkA02G189620LXL04_016116JCVI_TKOH_0008399.4100.0 / 100.0Strict
TkA02G189770LXL04_016112JCVI_TKOH_0008399.879.478 / 100.0Complex
TkA02G189780LXL04_016111JCVI_TKOH_00083100.0100.0 / 100.0Review
TkA02G189800LXL04_016110JCVI_TKOH_0008399.4100.0 / 100.0Complex
TkA02G189810LXL04_016109JCVI_TKOH_0008398.3100.0 / 100.0Complex
TkA02G189950LXL04_016127JCVI_TKOH_0008399.7100.0 / 80.59Complex
TkA02G189960LXL04_016126JCVI_TKOH_00083100.038.679 / 57.746Review
TkA02G190470LXL04_016124JCVI_TKOH_0008395.277.778 / 64.615Complex
TkA02G190510LXL04_016122JCVI_TKOH_0008398.5100.0 / 69.685Complex
TkA02G190520LXL04_016121JCVI_TKOH_0008398.6100.0 / 100.0Complex
TkA02G191190LXL04_016119JCVI_TKOH_0008397.9100.0 / 100.0Complex
TkA02G191600LXL04_016117JCVI_TKOH_0008398.3100.0 / 100.0Complex
TkA02G191610LXL04_016116JCVI_TKOH_0008399.792.157 / 18.318Review
TkA02G191700LXL04_016112JCVI_TKOH_0008399.879.478 / 100.0Complex
TkA02G191710LXL04_016111JCVI_TKOH_0008386.796.759 / 81.695Complex
TkA02G191750LXL04_016110JCVI_TKOH_0008388.598.113 / 64.865Complex
TkA02G191760LXL04_016109JCVI_TKOH_0008398.1100.0 / 100.0Complex
TkA02G191800LXL04_016108JCVI_TKOH_0008398.995.812 / 64.894Review
TkA02G192230LXL04_016098JCVI_TKOH_0008399.8100.0 / 100.0Strict
TkA02G192270LXL04_016100JCVI_TKOH_0008397.0100.0 / 100.0Strict
TkA02G192610LXL04_016102JCVI_TKOH_0008395.7100.0 / 100.0Complex
TkA02G192680LXL04_016103JCVI_TKOH_0008399.7100.0 / 100.0Strict
TkA02G192970LXL04_016092JCVI_TKOH_0008399.298.468 / 97.472Strict
TkA02G193570LXL04_016091JCVI_TKOH_00083100.0100.0 / 100.0Strict
TkA02G193970LXL04_016087JCVI_TKOH_0008394.474.118 / 94.964Probable