Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00186

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 36

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00186

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00186 Chr04 48439751-49663925 Chr06 101857358-102992337 mixed High 36 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00186`	Chr04:48439751-49663925	Chr06:101857358-102992337	mixed	36	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 36 · Showing 1–36 · Page 1/1

Download All Anchors TSV

TkA04G187940 → LXL04_029898

98.6%

TkA04G188160 → LXL04_029896

98.8%

TkA04G188240 → LXL04_029895

100.0%

TkA04G188250 → LXL04_029893

78.5%

TkA04G188270 → LXL04_029891

99.4%

TkA04G188320 → LXL04_029891

85.2%

TkA04G188650 → LXL04_029889

98.8%

TkA04G188700 → LXL04_029889

78.4%

TkA04G188820 → LXL04_029887

99.8%

TkA04G188950 → LXL04_029886

88.4%

TkA04G189130 → LXL04_029885

100.0%

TkA04G189220 → LXL04_029884

92.4%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA04G187940`	`LXL04_029898`	`JCVI_TKOH_00186`	98.6	100.0 / 100.0	Complex
`TkA04G188160`	`LXL04_029896`	`JCVI_TKOH_00186`	98.8	100.0 / 100.0	Complex
`TkA04G188240`	`LXL04_029895`	`JCVI_TKOH_00186`	100.0	41.818 / 38.983	Complex
`TkA04G188250`	`LXL04_029893`	`JCVI_TKOH_00186`	78.5	100.0 / 31.357	Complex
`TkA04G188270`	`LXL04_029891`	`JCVI_TKOH_00186`	99.4	100.0 / 100.0	Review
`TkA04G188320`	`LXL04_029891`	`JCVI_TKOH_00186`	85.2	69.274 / 81.646	Complex
`TkA04G188650`	`LXL04_029889`	`JCVI_TKOH_00186`	98.8	98.559 / 51.274	Review
`TkA04G188700`	`LXL04_029889`	`JCVI_TKOH_00186`	78.4	83.668 / 50.075	Complex
`TkA04G188820`	`LXL04_029887`	`JCVI_TKOH_00186`	99.8	86.37 / 99.593	Complex
`TkA04G188950`	`LXL04_029886`	`JCVI_TKOH_00186`	88.4	93.77 / 76.555	Complex
`TkA04G189130`	`LXL04_029885`	`JCVI_TKOH_00186`	100.0	98.734 / 64.463	Complex
`TkA04G189220`	`LXL04_029884`	`JCVI_TKOH_00186`	92.4	95.226 / 100.0	Complex
`TkA04G189440`	`LXL04_029881`	`JCVI_TKOH_00186`	98.7	100.0 / 97.857	Complex
`TkA04G189950`	`LXL04_029877`	`JCVI_TKOH_00186`	99.2	100.0 / 100.0	Complex
`TkA04G189960`	`LXL04_029876`	`JCVI_TKOH_00186`	100.0	100.0 / 100.0	Complex
`TkA04G189990`	`LXL04_029875`	`JCVI_TKOH_00186`	95.8	100.0 / 100.0	Complex
`TkA04G190000`	`LXL04_029874`	`JCVI_TKOH_00186`	95.3	100.0 / 72.786	Complex
`TkA04G190030`	`LXL04_029873`	`JCVI_TKOH_00186`	98.6	100.0 / 64.851	Complex
`TkA04G190050`	`LXL04_029875`	`JCVI_TKOH_00186`	82.8	99.66 / 39.257	Complex
`TkA04G190120`	`LXL04_029875`	`JCVI_TKOH_00186`	82.1	89.313 / 15.517	Complex
`TkA04G190140`	`LXL04_029871`	`JCVI_TKOH_00186`	98.6	100.0 / 100.0	Review
`TkA04G190190`	`LXL04_029870`	`JCVI_TKOH_00186`	97.8	99.725 / 96.219	Complex
`TkA04G190380`	`LXL04_029869`	`JCVI_TKOH_00186`	100.0	100.0 / 100.0	Complex
`TkA04G190560`	`LXL04_029867`	`JCVI_TKOH_00186`	94.1	72.034 / 36.325	Complex
`TkA04G190760`	`LXL04_029865`	`JCVI_TKOH_00186`	99.0	97.494 / 88.409	Complex
`TkA04G190980`	`LXL04_029864`	`JCVI_TKOH_00186`	100.0	100.0 / 100.0	Complex
`TkA04G191040`	`LXL04_029863`	`JCVI_TKOH_00186`	98.0	100.0 / 100.0	Review
`TkA04G191050`	`LXL04_029862`	`JCVI_TKOH_00186`	88.9	69.903 / 100.0	Review
`TkA04G191060`	`LXL04_029861`	`JCVI_TKOH_00186`	89.7	98.457 / 99.399	Complex
`TkA04G191070`	`LXL04_029860`	`JCVI_TKOH_00186`	99.3	100.0 / 100.0	Complex
`TkA04G191080`	`LXL04_029859`	`JCVI_TKOH_00186`	100.0	100.0 / 100.0	Complex
`TkA04G191370`	`LXL04_029855`	`JCVI_TKOH_00186`	98.4	95.413 / 81.332	Complex
`TkA04G192270`	`LXL04_029853`	`JCVI_TKOH_00186`	99.6	100.0 / 95.716	Complex
`TkA04G192370`	`LXL04_029850`	`JCVI_TKOH_00186`	100.0	100.0 / 100.0	Complex
`TkA04G192410`	`LXL04_029848`	`JCVI_TKOH_00186`	99.0	100.0 / 100.0	Review
`TkA04G192500`	`LXL04_029848`	`JCVI_TKOH_00186`	68.6	100.0 / 100.0	Complex