Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00081

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 87

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00081

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00081 Chr02 37817471-43162805 Chr03 115714732-121245447 mixed High 87 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00081`	Chr02:37817471-43162805	Chr03:115714732-121245447	mixed	87	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 87 · Showing 1–87 · Page 1/1

Download All Anchors TSV

TkA02G146960 → LXL04_016397

100.0%

TkA02G146990 → LXL04_016396

58.1%

TkA02G147000 → LXL04_016396

86.9%

TkA02G147090 → LXL04_016395

88.8%

TkA02G147160 → LXL04_016389

66.7%

TkA02G147350 → LXL04_016392

84.4%

TkA02G147490 → LXL04_016390

86.3%

TkA02G147770 → LXL04_016389

86.3%

TkA02G147780 → LXL04_016388

99.2%

TkA02G147880 → LXL04_016387

93.6%

TkA02G148100 → LXL04_016385

94.0%

TkA02G148130 → LXL04_016385

100.0%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA02G146960`	`LXL04_016397`	`JCVI_TKOH_00081`	100.0	100.0 / 100.0	Review
`TkA02G146990`	`LXL04_016396`	`JCVI_TKOH_00081`	58.1	78.146 / 77.5	Complex
`TkA02G147000`	`LXL04_016396`	`JCVI_TKOH_00081`	86.9	100.0 / 100.0	Complex
`TkA02G147090`	`LXL04_016395`	`JCVI_TKOH_00081`	88.8	100.0 / 100.0	Review
`TkA02G147160`	`LXL04_016389`	`JCVI_TKOH_00081`	66.7	99.359 / 100.0	Complex
`TkA02G147350`	`LXL04_016392`	`JCVI_TKOH_00081`	84.4	98.718 / 76.606	Review
`TkA02G147490`	`LXL04_016390`	`JCVI_TKOH_00081`	86.3	99.359 / 99.408	Complex
`TkA02G147770`	`LXL04_016389`	`JCVI_TKOH_00081`	86.3	100.0 / 100.0	Complex
`TkA02G147780`	`LXL04_016388`	`JCVI_TKOH_00081`	99.2	100.0 / 100.0	Complex
`TkA02G147880`	`LXL04_016387`	`JCVI_TKOH_00081`	93.6	100.0 / 100.0	Complex
`TkA02G148100`	`LXL04_016385`	`JCVI_TKOH_00081`	94.0	98.777 / 35.834	Review
`TkA02G148130`	`LXL04_016385`	`JCVI_TKOH_00081`	100.0	86.434 / 7.304	Review
`TkA02G148140`	`LXL04_016385`	`JCVI_TKOH_00081`	100.0	92.78 / 8.418	Review
`TkA02G148650`	`LXL04_016375`	`JCVI_TKOH_00081`	93.6	100.0 / 100.0	Complex
`TkA02G148830`	`LXL04_016372`	`JCVI_TKOH_00081`	100.0	100.0 / 100.0	Strict
`TkA02G148870`	`LXL04_016371`	`JCVI_TKOH_00081`	100.0	100.0 / 100.0	Complex
`TkA02G148960`	`LXL04_016370`	`JCVI_TKOH_00081`	96.2	100.0 / 100.0	Strict
`TkA02G148980`	`LXL04_016369`	`JCVI_TKOH_00081`	98.5	100.0 / 100.0	Strict
`TkA02G150360`	`LXL04_016363`	`JCVI_TKOH_00081`	92.6	91.633 / 90.157	Probable
`TkA02G150380`	`LXL04_016362`	`JCVI_TKOH_00081`	93.2	100.0 / 100.0	Complex
`TkA02G150850`	`LXL04_016348`	`JCVI_TKOH_00081`	85.2	99.279 / 59.855	Complex
`TkA02G150970`	`LXL04_016349`	`JCVI_TKOH_00081`	86.1	100.0 / 100.0	Review
`TkA02G151260`	`LXL04_016348`	`JCVI_TKOH_00081`	99.2	95.971 / 75.942	Complex
`TkA02G153110`	`LXL04_016345`	`JCVI_TKOH_00081`	100.0	100.0 / 42.478	Review
`TkA02G153120`	`LXL04_016335`	`JCVI_TKOH_00081`	99.2	100.0 / 16.596	Review
`TkA02G153160`	`LXL04_016344`	`JCVI_TKOH_00081`	91.3	100.0 / 100.0	Complex
`TkA02G153300`	`LXL04_016341`	`JCVI_TKOH_00081`	99.2	96.875 / 82.667	Complex
`TkA02G153550`	`LXL04_016338`	`JCVI_TKOH_00081`	100.0	100.0 / 100.0	Strict
`TkA02G153840`	`LXL04_016335`	`JCVI_TKOH_00081`	100.0	100.0 / 100.0	Review
`TkA02G154650`	`LXL04_016334`	`JCVI_TKOH_00081`	99.5	85.455 / 36.015	Review
`TkA02G155410`	`LXL04_016331`	`JCVI_TKOH_00081`	100.0	99.286 / 66.827	Review
`TkA02G155420`	`LXL04_016331`	`JCVI_TKOH_00081`	84.7	85.0 / 39.904	Complex
`TkA02G155460`	`LXL04_016330`	`JCVI_TKOH_00081`	76.4	100.0 / 93.067	Review
`TkA02G155550`	`LXL04_016329`	`JCVI_TKOH_00081`	76.5	100.0 / 78.82	Review
`TkA02G155560`	`LXL04_016328`	`JCVI_TKOH_00081`	100.0	100.0 / 100.0	Strict
`TkA02G155640`	`LXL04_016327`	`JCVI_TKOH_00081`	100.0	100.0 / 100.0	Strict
`TkA02G156020`	`LXL04_016325`	`JCVI_TKOH_00081`	97.4	100.0 / 100.0	Strict
`TkA02G156160`	`LXL04_016324`	`JCVI_TKOH_00081`	99.0	100.0 / 50.663	Review
`TkA02G156180`	`LXL04_016323`	`JCVI_TKOH_00081`	95.0	100.0 / 100.0	Strict
`TkA02G157000`	`LXL04_016319`	`JCVI_TKOH_00081`	100.0	85.098 / 71.148	Complex
`TkA02G157040`	`LXL04_016318`	`JCVI_TKOH_00081`	100.0	100.0 / 69.231	Complex
`TkA02G157070`	`LXL04_016317`	`JCVI_TKOH_00081`	100.0	100.0 / 100.0	Strict
`TkA02G157110`	`LXL04_016315`	`JCVI_TKOH_00081`	78.9	100.0 / 29.622	Complex
`TkA02G157570`	`LXL04_016313`	`JCVI_TKOH_00081`	100.0	100.0 / 100.0	Strict
`TkA02G159280`	`LXL04_016306`	`JCVI_TKOH_00081`	75.4	98.832 / 38.115	Review
`TkA02G159360`	`LXL04_016305`	`JCVI_TKOH_00081`	91.3	80.165 / 42.449	Review
`TkA02G159450`	`LXL04_016303`	`JCVI_TKOH_00081`	99.4	100.0 / 100.0	Strict
`TkA02G159500`	`LXL04_016301`	`JCVI_TKOH_00081`	96.8	82.667 / 99.2	Strict
`TkA02G159610`	`LXL04_016299`	`JCVI_TKOH_00081`	64.9	95.42 / 87.059	Complex
`TkA02G159690`	`LXL04_016305`	`JCVI_TKOH_00081`	53.5	70.455 / 41.224	Complex
`TkA02G159720`	`LXL04_016299`	`JCVI_TKOH_00081`	87.2	100.0 / 100.0	Complex
`TkA02G160090`	`LXL04_016298`	`JCVI_TKOH_00081`	97.8	97.5 / 67.883	Complex
`TkA02G160450`	`LXL04_016294`	`JCVI_TKOH_00081`	90.2	100.0 / 60.979	Review
`TkA02G160500`	`LXL04_016294`	`JCVI_TKOH_00081`	78.4	82.246 / 26.72	Complex
`TkA02G160590`	`LXL04_016294`	`JCVI_TKOH_00081`	80.7	87.903 / 26.72	Complex
`TkA02G160640`	`LXL04_016293`	`JCVI_TKOH_00081`	90.8	100.0 / 79.545	Probable
`TkA02G160840`	`LXL04_016291`	`JCVI_TKOH_00081`	67.4	44.66 / 8.425	Complex
`TkA02G161050`	`LXL04_016290`	`JCVI_TKOH_00081`	97.9	100.0 / 100.0	Complex
`TkA02G161280`	`LXL04_016290`	`JCVI_TKOH_00081`	93.5	100.0 / 100.0	Complex
`TkA02G161570`	`LXL04_016289`	`JCVI_TKOH_00081`	69.7	98.02 / 11.422	Complex
`TkA02G161610`	`LXL04_016289`	`JCVI_TKOH_00081`	97.1	100.0 / 15.967	Review
`TkA02G161690`	`LXL04_016289`	`JCVI_TKOH_00081`	56.3	84.81 / 16.2	Complex
`TkA02G161860`	`LXL04_016288`	`JCVI_TKOH_00081`	96.6	99.153 / 36.111	Review
`TkA02G162060`	`LXL04_016287`	`JCVI_TKOH_00081`	73.5	100.0 / 84.297	Complex
`TkA02G162070`	`LXL04_016283`	`JCVI_TKOH_00081`	96.0	96.992 / 75.22	Complex
`TkA02G162160`	`LXL04_016281`	`JCVI_TKOH_00081`	96.4	97.053 / 51.092	Review
`TkA02G162480`	`LXL04_016277`	`JCVI_TKOH_00081`	81.8	98.529 / 70.266	Complex
`TkA02G162620`	`LXL04_016276`	`JCVI_TKOH_00081`	73.4	99.563 / 87.876	Complex
`TkA02G162890`	`LXL04_016267`	`JCVI_TKOH_00081`	95.0	85.802 / 67.476	Complex
`TkA02G163020`	`LXL04_016283`	`JCVI_TKOH_00081`	58.3	79.412 / 13.561	Complex
`TkA02G163030`	`LXL04_016267`	`JCVI_TKOH_00081`	88.3	100.0 / 95.146	Review
`TkA02G163290`	`LXL04_016255`	`JCVI_TKOH_00081`	79.6	85.781 / 79.108	Complex
`TkA02G163340`	`LXL04_016255`	`JCVI_TKOH_00081`	97.7	95.531 / 80.282	Complex
`TkA02G164210`	`LXL04_016255`	`JCVI_TKOH_00081`	82.1	92.992 / 79.108	Complex
`TkA02G164630`	`LXL04_016254`	`JCVI_TKOH_00081`	77.7	71.852 / 43.46	Complex
`TkA02G164640`	`LXL04_016254`	`JCVI_TKOH_00081`	87.2	93.069 / 38.819	Complex
`TkA02G164700`	`LXL04_016253`	`JCVI_TKOH_00081`	99.5	96.3 / 98.883	Complex
`TkA02G164890`	`LXL04_016249`	`JCVI_TKOH_00081`	91.8	100.0 / 100.0	Complex
`TkA02G164940`	`LXL04_016246`	`JCVI_TKOH_00081`	98.5	100.0 / 100.0	Complex
`TkA02G165040`	`LXL04_016245`	`JCVI_TKOH_00081`	98.1	100.0 / 73.307	Complex
`TkA02G165640`	`LXL04_016239`	`JCVI_TKOH_00081`	99.4	100.0 / 100.0	Strict
`TkA02G166200`	`LXL04_016238`	`JCVI_TKOH_00081`	100.0	100.0 / 97.115	Review
`TkA02G166530`	`LXL04_016237`	`JCVI_TKOH_00081`	84.2	98.919 / 50.123	Complex
`TkA02G167280`	`LXL04_016232`	`JCVI_TKOH_00081`	100.0	100.0 / 100.0	Strict
`TkA02G168280`	`LXL04_016229`	`JCVI_TKOH_00081`	98.6	100.0 / 100.0	Strict
`TkA02G168350`	`LXL04_016227`	`JCVI_TKOH_00081`	99.6	83.596 / 100.0	Complex
`TkA02G168370`	`LXL04_016224`	`JCVI_TKOH_00081`	90.9	100.0 / 100.0	Complex