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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG096730
Reference: TK1151 Chr: ChrUn Coordinates: 27341545-27343281 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1614 bp · TkAUNG096730|TK1151|cDNA

ATGCAAGCGGCAGTCCCCCTGTTTGAACGCCAGTTCTTTCTAGCATTTCGTCGAGCACTTTCCATCTCTTGTTCCTCCCAACGCCTCCTCATTCCCAATACTCTTACATTCTCTACTCATGCGACAGATAATTTAGAACCTATCAAGGACGAAGGAACAACTGACGGCGCGGAATCAATCAGCGAGGATAATGAAGAAGCTCCCGGAAGCTTATGTGGGAGGATAGAGAAGCTAGCAAGAGGAGACCCTGTTGGTTCCGC...

CDS

Download CDS FASTA

1614 bp · TkAUNG096730|TK1151|CDS

ATGCAAGCGGCAGTCCCCCTGTTTGAACGCCAGTTCTTTCTAGCATTTCGTCGAGCACTTTCCATCTCTTGTTCCTCCCAACGCCTCCTCATTCCCAATACTCTTACATTCTCTACTCATGCGACAGATAATTTAGAACCTATCAAGGACGAAGGAACAACTGACGGCGCGGAATCAATCAGCGAGGATAATGAAGAAGCTCCCGGAAGCTTATGTGGGAGGATAGAGAAGCTAGCAAGAGGAGACCCTGTTGGTTCCGC...

Protein

Download Protein FASTA

537 aa · TkAUNG096730|TK1151|PROTEIN

MQAAVPLFERQFFLAFRRALSISCSSQRLLIPNTLTFSTHATDNLEPIKDEGTTDGAESISEDNEEAPGSLCGRIEKLARGDPVGSAFQSWMGDGFPIHRGDIFHTINRLRKRKFNKRALEVMEWVIRERPYMPKQLDYSFLLEFTAKLHGIPQGEKLFSHIPSEFQDELLYNNLVIACLDKGMIRLSLAYMKKMRELGHSISYMVFNRLIILHSSPSRRKSIPKILTQMKADKVPRHVSTYNILLKMEASQHNIQGLNK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG096730
TK1151 IDTkAUNG096730
OH-1004 IDLXL04_036435
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)97.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG096730
LocationChrUn:27341545-27343281 (-)
DescriptionSimilar to At1g07590: Pentatricopeptide repeat-containing protein At1g07590, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07590 Pentatricopeptide repeat-containing protein At1g07590, mitochondrial. No verified direct reference in this release
At1g02370 Pentatricopeptide repeat-containing protein At1g02370, mitochondrial. No verified direct reference in this release
At1g28020 Putative pentatricopeptide repeat-containing protein At1g28020. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036435 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0080156 mitochondrial mRNA modification Biological Process
GO:1902775 mitochondrial large ribosomal subunit assembly Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0140978 mitochondrial large ribosomal subunit binding Molecular Function
KEGG gene cross-reference
ath:AT1G02150
ath:AT1G07590
ath:AT1G15480
ath:AT1G60770
ath:AT1G80270
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.791
Rank 1 · TkAUNG096730 · TK1151
Plastid0.134
Rank 2 · TkAUNG096730 · TK1151
Nucleus0.054
Rank 3 · TkAUNG096730 · TK1151
Cytoplasm0.030
Rank 4 · TkAUNG096730 · TK1151
Cell membrane0.010
Rank 5 · TkAUNG096730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30136MSC6_C30-64 aa
PF13041PPR_231-39 aa
PF12854PPR_132-39 aa
PF26565PH_39110-195 aa
PF13812PPR_3116-143 aa
PF13041PPR_2169-201 aa
PF01535PPR172-199 aa
PF13812PPR_3172-211 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG096730PF30136MSC6_C30640.02914.4
TkAUNG096730PF13041PPR_231393.6e-33114.2
TkAUNG096730PF12854PPR_132391.1e-1351.4
TkAUNG096730PF26565PH_391101950.2112.0
TkAUNG096730PF13812PPR_31161431.8e-1660.7
TkAUNG096730PF13041PPR_21692013.6e-33114.2
TkAUNG096730PF01535PPR1721991.4e-2485.2
TkAUNG096730PF13812PPR_31722111.8e-1660.7
TkAUNG096730PF23276TPR_241812961e-1042.3
TkAUNG096730PF29070MSC6_N2214014.2e-1143.3
TkAUNG096730PF24760TPR_IF140_C2212650.006117.7
TkAUNG096730PF13812PPR_32252801.8e-1660.7
TkAUNG096730PF17177PPR_long2252783.4e-0833.8
TkAUNG096730PF13041PPR_22392833.6e-33114.2
TkAUNG096730PF12854PPR_12392471.1e-1351.4
TkAUNG096730PF19189Mtf22392840.07613.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q940Q2Arabidopsis thalianasp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590, mitochondrial64.100%Swiss-ProtHigh
Q9FZ24Arabidopsis thalianasp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial22.800%Swiss-ProtLow
Q9C7F1Arabidopsis thalianasp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g2802022.700%Swiss-ProtLow

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