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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG095170
Reference: TK1151 Chr: ChrUn Coordinates: 26913670-26916422 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1503 bp · TkAUNG095170|TK1151|cDNA

ATTACACCTCCTCGTCGGCTCGACGCTGAAATCGGCCCTCTGTGAAATCGATCCGCCCTCTTTCCCATCGGCCCTCTGTGAAATCGATTCCCTCTTAACTCCATCTCCTGAAATCGGCATCTGTTGACTTCATCCCTGTCCTCCGATTGTAATTTCAGACTCAATCAACTCAATCAGTCATCGCCAATCAGCTATCCTTTGAATCGTGGATTGCAACTCGGCTCATCTCATTTTATAATCTCGAACAGGTTTTAGTTACA...

CDS

Download CDS FASTA

957 bp · TkAUNG095170|TK1151|CDS

ATGGCTGAAAAACCGGAAGAAGAACAAAAACCAGAACAAGTGTGCAACTTTTTCAGAAAACCATCAAAGAACAAAAACATCCGAAAAAGAGTTCACGATGAGGAACAAGAAGAACCGTCCGTCATAATCAACAAGAAAAAGCCCATGGCACCAGACAACAAATTACATTTCGCCACTGGATCATCAAAACGATCCACAACATCACAGCAACAATCAGACACAAAATCATCAATTTTCCAATTCGATTCCTCCAAAGAAAT...

Protein

Download Protein FASTA

318 aa · TkAUNG095170|TK1151|PROTEIN

MAEKPEEEQKPEQVCNFFRKPSKNKNIRKRVHDEEQEEPSVIINKKKPMAPDNKLHFATGSSKRSTTSQQQSDTKSSIFQFDSSKEIQVQNDSRATATLETETDFLRDARAIRERVLKQADEALKGKKGNDNEKLYKGIHGYTDYKAGFRREQTVASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEREWDEAEKVRKRKLAMKGDDDDDDDDEHDDDEDEDGLPFACFI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG095170
TK1151 IDTkAUNG095170
OH-1004 IDLXL04_026655
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)91.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG095170
LocationChrUn:26913670-26916422 (-)
DescriptionSimilar to At1g01350: Zinc finger CCCH domain-containing protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g01350 Zinc finger CCCH domain-containing protein 1. No verified direct reference in this release
At5g06420 Zinc finger CCCH domain-containing protein 51. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0301000 Zinc finger CCCH domain-containing protein 15. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026655 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006281 DNA repair Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0070100 negative regulation of chemokine-mediated signaling pathway Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005684 U2-type spliceosomal complex Cellular Component
GO:0016607 nuclear speck Cellular Component
GO:0071005 U2-type precatalytic spliceosome Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G01350
ath:AT5G06420
bta:493640
dosa:Os02g0301000
hsa:7737
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.934
Rank 1 · TkAUNG095170 · TK1151
Cytoplasm0.185
Rank 2 · TkAUNG095170 · TK1151
Mitochondrion0.019
Rank 3 · TkAUNG095170 · TK1151
Cell membrane0.017
Rank 4 · TkAUNG095170 · TK1151
Endoplasmic reticulum0.010
Rank 5 · TkAUNG095170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00642zf-CCCH13-20 aa
PF18044zf-CCCH_414-20 aa
PF12767SAGA-Tad128-122 aa
PF27816Ies1_C32-40 aa
PF27816Ies1_C102-136 aa
PF00642zf-CCCH181-206 aa
PF25585zf-CCCH_DUS3L183-211 aa
PF16685zf-RING_10184-190 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG095170PF00642zf-CCCH13205.9e-1039.5
TkAUNG095170PF18044zf-CCCH_414200.005817.1
TkAUNG095170PF12767SAGA-Tad1281220.5310.8
TkAUNG095170PF27816Ies1_C32408.27.2
TkAUNG095170PF27816Ies1_C1021368.27.2
TkAUNG095170PF00642zf-CCCH1812065.9e-1039.5
TkAUNG095170PF25585zf-CCCH_DUS3L1832111.8e-0628.5
TkAUNG095170PF16685zf-RING_101841900.003618.1
TkAUNG095170PF18044zf-CCCH_41852060.005817.1
TkAUNG095170PF14608zf-CCCH_21852050.01216.8
TkAUNG095170PF18345zf_CCCH_41862051.5e-0525.6
TkAUNG095170PF27816Ies1_C2272448.27.2
TkAUNG095170PF11789zf-Nse2562956.77.3
TkAUNG095170PF13920zf-C3HC4_32572983.8e-0833.7
TkAUNG095170PF13639zf-RING_22572965.6e-0524.0
TkAUNG095170PF16685zf-RING_102573010.003618.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GX84Arabidopsis thalianasp|Q8GX84|C3H1_ARATH Zinc finger CCCH domain-containing protein 175.200%Swiss-ProtHigh
Q9FNG6Arabidopsis thalianasp|Q9FNG6|C3H51_ARATH Zinc finger CCCH domain-containing protein 5173.500%Swiss-ProtHigh
Q6K4V3Oryza sativa subsp. japonicasp|Q6K4V3|C3H15_ORYSJ Zinc finger CCCH domain-containing protein 1568.000%Swiss-ProtHigh

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