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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG064110
Reference: TK1151 Chr: ChrUn Coordinates: 18598028-18600130 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

606 bp · TkAUNG064110|TK1151|cDNA

ATGCCTTTAGAAAGTGGGGAGAGACCACACCTCACGAAGGAGCTTCTTGCCGGATGTGAGAGCATTGAATGGCAGGTAGATGAACTGGAGAAGGCAATTACTGTTGCATCTAGAAATCCTACTGTGTATGGTATTGATGAAATAGAGCTTGATAAACGTAGAAGATGGACTAGCAGTGCTCGTGATCAGGTATCAACTATCATGAAGGAGTTGAATGACACAAACATCTCTAGTTTGAATGAAATGCGTCGTGAGCTTAA...

CDS

Download CDS FASTA

606 bp · TkAUNG064110|TK1151|CDS

ATGCCTTTAGAAAGTGGGGAGAGACCACACCTCACGAAGGAGCTTCTTGCCGGATGTGAGAGCATTGAATGGCAGGTAGATGAACTGGAGAAGGCAATTACTGTTGCATCTAGAAATCCTACTGTGTATGGTATTGATGAAATAGAGCTTGATAAACGTAGAAGATGGACTAGCAGTGCTCGTGATCAGGTATCAACTATCATGAAGGAGTTGAATGACACAAACATCTCTAGTTTGAATGAAATGCGTCGTGAGCTTAA...

Protein

Download Protein FASTA

201 aa · TkAUNG064110|TK1151|PROTEIN

MPLESGERPHLTKELLAGCESIEWQVDELEKAITVASRNPTVYGIDEIELDKRRRWTSSARDQVSTIMKELNDTNISSLNEMRRELKRLPNPHLPDKSYHYNDDFISSESDRQLLLMRQQDEELDELSASVQRIGGVGLTIHEELLAQEKIIDDLDLEMDSTSNRLDFVQKKVAVLMKKAGAKGQIMMICFLLVCSLFYLC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG064110
TK1151 IDTkAUNG064110
OH-1004 IDLXL04_035185
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)64.000
Protein coverage (%)TK1151 95.522 / OH-1004 81.070
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG064110
LocationChrUn:18598028-18600130 (-)
DescriptionSimilar to SYP61: Syntaxin-61
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g28490 Vesicle trafficking protein that functions in the secretory pathway.
OSM1/SYP61: a syntaxin protein in Arabidopsis controls abscisic acid-mediated and non-abscisic acid-mediated responses to abiotic stress.2002 · DOI: 10.1105/tpc.006981
YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network.2005 · DOI: 10.1016/j.jmb.2005.04.061
Isolation and proteomic analysis of the SYP61 compartment reveal its role in exocytic trafficking in Arabidopsis.2012 · DOI: 10.1038/cr.2011.129
Arabidopsis SNAREs SYP61 and SYP121 coordinate the trafficking of plasma membrane aquaporin PIP2;7 to modulate the cell membrane water permeability.2014 · DOI: 10.1105/tpc.114.127159
CESA TRAFFICKING INHIBITOR inhibits cellulose deposition and interferes with the trafficking of cellulose synthase complexes and their associated proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN1.2015 · DOI: 10.1104/pp.114.249003

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035185 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0006887 exocytosis Biological Process
GO:0006906 vesicle fusion Biological Process
GO:0007032 endosome organization Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0016189 synaptic vesicle to endosome fusion Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0032456 endocytic recycling Biological Process
GO:0032880 regulation of protein localization Biological Process
GO:0042147 retrograde transport, endosome to Golgi Biological Process
GO:0048193 Golgi vesicle transport Biological Process
GO:0048278 vesicle docking Biological Process
KEGG gene cross-reference
ath:AT1G28490
gga:424413
mmu:58244
pon:100173487
rno:60562
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.346
Rank 1 · TkAUNG064110 · TK1151
Lysosome / Vacuole0.295
Rank 2 · TkAUNG064110 · TK1151
Cytoplasm0.225
Rank 3 · TkAUNG064110 · TK1151
Endoplasmic reticulum0.132
Rank 4 · TkAUNG064110 · TK1151
Cell membrane0.110
Rank 5 · TkAUNG064110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF09177STX6_10_61_N5-67 aa
PF06825HSBP119-34 aa
PF15188CCDC-16721-28 aa
PF05739SNARE26-33 aa
PF10669Phage_Gp2345-88 aa
PF15188CCDC-16749-87 aa
PF06825HSBP165-84 aa
PF05739SNARE74-86 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG064110PF09177STX6_10_61_N5672.3e-1557.7
TkAUNG064110PF06825HSBP119341.69.3
TkAUNG064110PF15188CCDC-16721280.005217.7
TkAUNG064110PF05739SNARE26331e-1454.8
TkAUNG064110PF10669Phage_Gp2345882.49.2
TkAUNG064110PF15188CCDC-16749870.005217.7
TkAUNG064110PF06825HSBP165841.69.3
TkAUNG064110PF05739SNARE74861e-1454.8
TkAUNG064110PF10669Phage_Gp231101342.49.2
TkAUNG064110PF05739SNARE1161931e-1454.8
TkAUNG064110PF09177STX6_10_61_N1181322.3e-1557.7
TkAUNG064110PF06825HSBP11231331.69.3
TkAUNG064110PF15188CCDC-1671252000.005217.7
TkAUNG064110PF10669Phage_Gp231491742.49.2
TkAUNG064110PF06825HSBP11591811.69.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q946Y7Arabidopsis thalianasp|Q946Y7|SYP61_ARATH Syntaxin-6163.800%Swiss-ProtHigh

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