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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG001500
Reference: TK1151 Chr: ChrUn Coordinates: 403303-409588 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4586 bp · TkAUNG001500|TK1151|cDNA

CATATGAAATTTATTTCTTAAAGGAGGTATTATGAAACATTAGAAGAGGGAGGAGTATTTAAACTTGTCCCTTAATAGCCAGCCGCCCAACAGAGGTAAACGAAAACCAATTCGCACACAAAAACTCAAAAAGTCACGCTGCGAACAGCCGTCGGTCGTCCACAGAGCGCTGCCTCCGGATGGAATTCCCTTCGTTCAACCACCACCACCACCACCATCATCAGAACAGGTACGTTCCCCCTCCTCCTCCAACGAATTTT...

CDS

Download CDS FASTA

4131 bp · TkAUNG001500|TK1151|CDS

ATGGAATTCCCTTCGTTCAACCACCACCACCACCACCATCATCAGAACAGGTACGTTCCCCCTCCTCCTCCAACGAATTTTTCAGATGAGCGCCCCAATCTTTACCCTCACCACCAGCATCTTCTCCCATCACTTCATCTTCCCCCTCCTCCGCCGCTTGCATACCCTTCCCTCCCTCCTCCACCACCACCGCCGCTTCCTGTTCCACCTCCGCCACCATCTTACAACCCCCACCAATCTAACTTCACCTTTCTCGACGC...

Protein

Download Protein FASTA

1376 aa · TkAUNG001500|TK1151|PROTEIN

MEFPSFNHHHHHHHQNRYVPPPPPTNFSDERPNLYPHHQHLLPSLHLPPPPPLAYPSLPPPPPPPLPVPPPPPSYNPHQSNFTFLDAQSPSFFNNGRSSPPQPRLSNQSQRFVYRTDSWSDSHRVPTELSHRNPILPDDHHRRLYSPDSRSENHYKPHVSERGIPSSRYRDEAVVNGYASRDASNIVSQEQQVFRGSSSTDDHHARNIDRYASAQATGSSSRNLEEFVEKYEPRYITNSESERVWDHHGEDPRWSHQVKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG001500
TK1151 IDTkAUNG001500
OH-1004 IDLXL04_007709
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)96.600
Protein coverage (%)TK1151 100.000 / OH-1004 95.423
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG001500
LocationChrUn:403303-409588 (+)
DescriptionSimilar to At1g21570: Zinc finger CCCH domain-containing protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g21570 Possesses RNA-binding and ribonuclease activities in vitro. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007709 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0006401 RNA catabolic process Biological Process
GO:0010793 regulation of mRNA export from nucleus Biological Process
GO:0031124 mRNA 3'-end processing Biological Process
GO:0033621 nuclear mRNA surveillance of meiosis-specific transcripts Biological Process
GO:0051028 mRNA transport Biological Process
GO:0051168 nuclear export Biological Process
GO:0071030 nuclear mRNA surveillance of spliceosomal pre-mRNA splicing Biological Process
GO:0000785 chromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex Cellular Component
KEGG gene cross-reference
dme:Dmel_CG6694
hsa:23144
mmu:223642
spo:2540291
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.957
Rank 1 · TkAUNG001500 · TK1151
Cytoplasm0.084
Rank 2 · TkAUNG001500 · TK1151
Cell membrane0.035
Rank 3 · TkAUNG001500 · TK1151
Endoplasmic reticulum0.020
Rank 4 · TkAUNG001500 · TK1151
Plastid0.014
Rank 5 · TkAUNG001500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28918ZC3H3_M269-306 aa
PF28644C3H7_N286-320 aa
PF28644C3H7_N782-815 aa
PF28918ZC3H3_M914-926 aa
PF28644C3H7_N1057-1151 aa
PF28918ZC3H3_M1064-1144 aa
PF16131Torus1132-1172 aa
PF15663zf-CCCH_31146-1199 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG001500PF28918ZC3H3_M2693062.3e-0525.3
TkAUNG001500PF28644C3H7_N2863201.4e-48164.3
TkAUNG001500PF28644C3H7_N7828151.4e-48164.3
TkAUNG001500PF28918ZC3H3_M9149262.3e-0525.3
TkAUNG001500PF28644C3H7_N105711511.4e-48164.3
TkAUNG001500PF28918ZC3H3_M106411442.3e-0525.3
TkAUNG001500PF16131Torus113211720.7511.1
TkAUNG001500PF15663zf-CCCH_3114611990.09113.7
TkAUNG001500PF25542zf-CCCH_12114711730.01216.0
TkAUNG001500PF00642zf-CCCH114711721.110.0
TkAUNG001500PF25585zf-CCCH_DUS3L114711746.07.6
TkAUNG001500PF25584zf-CCCH_RBM22115111780.04914.4
TkAUNG001500PF18345zf_CCCH_4115111718.37.4
TkAUNG001500PF22628zf-CCCH_10115811760.6710.2
TkAUNG001500PF00642zf-CCCH117511931.110.0
TkAUNG001500PF22628zf-CCCH_10117611960.6710.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3ED78Arabidopsis thalianasp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 761.500%Swiss-ProtHigh

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