TkAUNG000890 | RubberDandelionOmics

Gene overview

TkAUNG000890

Reference: TK1151 Chr: ChrUn Coordinates: 203440-205393 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1426 bp · TkAUNG000890|TK1151|cDNA

GTTTTGTGTATGTGACGAAGGAAGACGAGACTGGGTCAAGTCTGAACCCTAATATCTATTTCAGTTCAAATTCTCACTCGAATATTTCCAGATCTGCTATTTCACGACACAATTCGTTATGTGAGTATCAATTATTCTTTCTGCTTGATTTGATTGATTGGATTTCATTGAGCAAGCTAAGAGTTCAAGTAACATCTTGGCATTTGTGAGTTTTGTTCGAATCTAAAGGCGGCGGGGGACGGAGGAGATGGACTTTAACT...

CDS

Download CDS FASTA

891 bp · TkAUNG000890|TK1151|CDS

ATGCGGCGGGGGACGGAGGAGATGGACTTTAACTCGGGTGGCGGCGGAGGTGCAGGAAGCGGAGGTAATGACGTGGAGCTGTTGTCCAAGACGTTGCAGGTGGAGCACAAGCTGTTTTACTTTGATCTCAAGGAGAATCCGCGCGGTCGTTACCTGAAGATATCGGAGAAAACGTCGGCGACAAGGTCCACCATAATCGTACCTTTCAACGGAATCTCATGGTTCTTCGACATCTTCAACTACTACGTCACTTCCGATGA...

Protein

Download Protein FASTA

296 aa · TkAUNG000890|TK1151|PROTEIN

MRRGTEEMDFNSGGGGGAGSGGNDVELLSKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFNGISWFFDIFNYYVTSDDQDISSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSTRDEGWSAFRNILEEINEASKLFVLPNQQNSDSITPERLVGLSDDVGAGFIAGNSSQPAPPPSTESTFELPPPSSDESGGFGVSKVIRADQKRFFFDLGSNNRGHYLRISEVAGSDRSSIILPLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG000890`
TK1151 ID	TkAUNG000890
OH-1004 ID	LXL04_014481
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.700
Protein coverage (%)	TK1151 97.635 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG000890

Location ChrUn:203440-205393 (+)

Description Similar to PURA1: Transcription factor Pur-alpha 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g32080`	Transcription factor that specifically binds the purine-rich double-stranded telomeric repeated sequence 5'-AAACCCTAA-3' found in promoter telo boxes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014481 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0006270 DNA replication initiation Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0007281 germ cell development Biological Process

GO:0008284 positive regulation of cell population proliferation Biological Process

GO:0040012 regulation of locomotion Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0050673 epithelial cell proliferation Biological Process

GO:0000781 chromosome, telomeric region Cellular Component

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT2G32080

cel:CELE_F45E4.2

dre:393519

hsa:5813

mmu:19290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.919

Rank 1 · TkAUNG000890 · TK1151

Cytoplasm0.231

Rank 2 · TkAUNG000890 · TK1151

Cell membrane0.031

Rank 3 · TkAUNG000890 · TK1151

Endoplasmic reticulum0.021

Rank 4 · TkAUNG000890 · TK1151

Lysosome / Vacuole0.017

Rank 5 · TkAUNG000890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04845PurA26-153 aa

PF11680DUF327626-61 aa

PF17611DUF550630-56 aa

PF24879DUF773746-71 aa

PF11680DUF327685-120 aa

PF17611DUF550698-120 aa

PF11680DUF3276139-152 aa

PF04845PurA219-272 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG000890	`PF04845`	PurA	26	153	6.5e-36	124.5
TkAUNG000890	`PF11680`	DUF3276	26	61	1.9e-06	28.7
TkAUNG000890	`PF17611`	DUF5506	30	56	0.14	12.8
TkAUNG000890	`PF24879`	DUF7737	46	71	0.13	12.9
TkAUNG000890	`PF11680`	DUF3276	85	120	1.9e-06	28.7
TkAUNG000890	`PF17611`	DUF5506	98	120	0.14	12.8
TkAUNG000890	`PF11680`	DUF3276	139	152	1.9e-06	28.7
TkAUNG000890	`PF04845`	PurA	219	272	6.5e-36	124.5
TkAUNG000890	`PF11680`	DUF3276	219	246	1.9e-06	28.7
TkAUNG000890	`PF17611`	DUF5506	219	244	0.14	12.8
TkAUNG000890	`PF24879`	DUF7737	235	278	0.13	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SKZ1`	Arabidopsis thaliana	sp\|Q9SKZ1\|PUR_ARATH Transcription factor Pur-alpha 1	78.300%	Swiss-Prot	High

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