RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G350480
Reference: TK1151 Chr: Chr08 Coordinates: 89818888-89824258 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1499 bp · TkA08G350480|TK1151|cDNA

GAAAGACCTCAACTTTACATCTTCCCCTTCACTTTTCAGGGAAAAACAAAAATAAAGAGTAGGGTTAGTGTGCCTGATTCACCCCTCCCTCATTCTTTTCTGATTTGAAGGTCCGAGAAAAACAAGAAAAACAAGGTTGTGGTGGTCTATTGCTGATGGTAGCGGGGTAGGGTTATGGGTGTGATTTGTGGCTACTATGGTGTTGGTTTGGCGGTGGTGATGGTGGGATTGAGGGTATCAAACTCCTTTTTATGTGTCAC...

CDS

Download CDS FASTA

675 bp · TkA08G350480|TK1151|CDS

ATGAAATCTTCAAATCGCTGTTCAGTTATCATCGTCGGAACCGGAATTTCAGGCATATCGGCAGCGAAGGTATTGGCCCAGAATGGTGTGGAGGACATTTTGATACTTGAAGCGTCGGATAGTATCGGTGGAAGAATAAAAAAGCACAATTTCGGAAACATATCCGTGGAGCTCGGTGCCGGTTGGATCGCCGGTGTTGGTGGAAAAGAACCTAATCCTGTTTGGGAGTTAGCTGCTCAATCCGGTCTTCGTACATGCTT...

Protein

Download Protein FASTA

224 aa · TkA08G350480|TK1151|PROTEIN

MKSSNRCSVIIVGTGISGISAAKVLAQNGVEDILILEASDSIGGRIKKHNFGNISVELGAGWIAGVGGKEPNPVWELAAQSGLRTCFSDYSNARYNIYDRSGEIFPSGVAGDTYKKAVESAIEKLRTDQDSLLAADVSDDPQLSTIPKTPIELAIDFNLQDFEMAEVEPISTYVDFGEREYLVAEERGYEYLLYKMAEEFLFTSDGKIFDNRLKLNTVSLQNLP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G350480
TK1151 IDTkA08G350480
OH-1004 IDLXL04_034075
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)95.900
Protein coverage (%)TK1151 97.321 / OH-1004 44.764
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G350480
LocationChr08:89818888-89824258 (+)
DescriptionSimilar to PAO1: Polyamine oxidase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g13700 Flavoenzyme involved in polyamine back-conversion.
Heterologous expression and biochemical characterization of a polyamine oxidase from Arabidopsis involved in polyamine back conversion.2006 · DOI: 10.1104/pp.106.080911
Characterization of five polyamine oxidase isoforms in Arabidopsis thaliana.2010 · DOI: 10.1007/s00299-010-0881-1
Functional diversity inside the Arabidopsis polyamine oxidase gene family.2011 · DOI: 10.1093/jxb/erq341
Reducing Cytoplasmic Polyamine Oxidase Activity in Arabidopsis Increases Salt and Drought Tolerance by Reducing Reactive Oxygen Species Production and Increasing Defense Gene Expression.2016 · DOI: 10.3389/fpls.2016.00214
At2g43020 Flavoenzyme involved in polyamine back-conversion.
Characterization of five polyamine oxidase isoforms in Arabidopsis thaliana.2010 · DOI: 10.1007/s00299-010-0881-1
Functional diversity inside the Arabidopsis polyamine oxidase gene family.2011 · DOI: 10.1093/jxb/erq341
POLYAMINE OXIDASE2 of Arabidopsis contributes to ABA mediated plant developmental processes.2015 · DOI: 10.1016/j.plaphy.2015.08.003

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0368200 Flavoenzyme involved in polyamine back-conversion (By similarity). No verified direct reference in this release
Os09g0368500 Flavoenzyme involved in polyamine back-conversion.
Polyamine oxidase 7 is a terminal catabolism-type enzyme in Oryza sativa and is specifically expressed in anthers.2014 · DOI: 10.1093/pcp/pcu047
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034075 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006598 polyamine catabolic process Biological Process
GO:0046203 spermidine catabolic process Biological Process
GO:0046208 spermine catabolic process Biological Process
GO:1903602 thermospermine catabolic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0048046 apoplast Cellular Component
GO:0046592 polyamine oxidase activity Molecular Function
GO:0050660 flavin adenine dinucleotide binding Molecular Function
GO:0052897 N8-acetylspermidine:oxygen oxidoreductase (propane-1,3-diamine-forming) activity Molecular Function
GO:0052900 spermine oxidase (propane-1,3-diamine-forming) activity Molecular Function
GO:0052901 spermine oxidase activity Molecular Function
KEGG gene cross-reference
ath:AT5G13700
dosa:Os09g0368200
dosa:Os09g0368500
zma:541983
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.347
Rank 1 · TkA08G350480 · TK1151
Plastid0.276
Rank 2 · TkA08G350480 · TK1151
Peroxisome0.169
Rank 3 · TkA08G350480 · TK1151
Nucleus0.158
Rank 4 · TkA08G350480 · TK1151
Extracellular0.092
Rank 5 · TkA08G350480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01488Shikimate_DH4-36 aa
PF00899ThiF5-35 aa
PF01946Thi47-45 aa
PF01494FAD_binding_37-35 aa
PF07992Pyr_redox_28-36 aa
PF03486HI0933_like8-48 aa
PF06100MCRA8-49 aa
PF00070Pyr_redox8-43 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G350480PF01488Shikimate_DH4360.212.5
TkA08G350480PF00899ThiF5350.2411.2
TkA08G350480PF01946Thi47452.1e-0524.6
TkA08G350480PF01494FAD_binding_37350.0002820.9
TkA08G350480PF07992Pyr_redox_28360.01715.2
TkA08G350480PF03486HI0933_like8480.02215.0
TkA08G350480PF06100MCRA8490.1711.4
TkA08G350480PF00070Pyr_redox8430.212.9
TkA08G350480PF01266DAO91061.5e-0628.7
TkA08G350480PF12831FAD_oxidored9450.001318.8
TkA08G350480PF00890FAD_binding_29450.002118.1
TkA08G350480PF01134GIDA9510.009515.7
TkA08G350480PF00743FMO-like9470.1611.1
TkA08G350480PF13738Pyr_redox_310450.0115.9
TkA08G350480PF13454NAD_binding_910460.2312.1
TkA08G350480PF13450NAD_binding_811773.2e-1247.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FNA2Arabidopsis thalianasp|Q9FNA2|PAO1_ARATH Polyamine oxidase 173.500%Swiss-ProtHigh
Q9SKX5Arabidopsis thalianasp|Q9SKX5|PAO2_ARATH Polyamine oxidase 233.800%Swiss-ProtMedium
A0A0P0XM10Oryza sativa subsp. japonicasp|A0A0P0XM10|PAO6_ORYSJ Polyamine oxidase 636.000%Swiss-ProtMedium
Q0J290Oryza sativa subsp. japonicasp|Q0J290|PAO7_ORYSJ Polyamine oxidase 737.100%Swiss-ProtMedium

JBrowse

View in Genome Browser