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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G278990
Reference: TK1151 Chr: Chr08 Coordinates: 72517140-72522477 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4131 bp · TkA08G278990|TK1151|cDNA

AATTTTACCTAGTTTGACATTATCATTAATAGTTCTTGTTTTTTCAGCAGGTGAATTCAAAGATAGTGTAAATCTTATAAGTTCTCAAATGGCTGACCTGCTAGTAGGTTTTGCTAGTAATGTGTTAGCTAAACTTGGAGAAAAGCTTTTTGTTGCAACTGGTCGTCACCTAAGATATGTACTTTACTATAACAACTACATTCAAATTCTAGAAAAAGAAGTGGACAAATTAATGGTAAAATCACAAGATATCAAACGAG...

CDS

Download CDS FASTA

3960 bp · TkA08G278990|TK1151|CDS

ATGGCTGACCTGCTAGTAGGTTTTGCTAGTAATGTGTTAGCTAAACTTGGAGAAAAGCTTTTTGTTGCAACTGGTCGTCACCTAAGATATGTACTTTACTATAACAACTACATTCAAATTCTAGAAAAAGAAGTGGACAAATTAATGGTAAAATCACAAGATATCAAACGAGAAGTTGATATAGCACTAAGAAACGGAGAAATCATTTCATCCGAGGTTGAACAATGGTTTTCAAATTTGGATGCTATCTATGAAGATTC...

Protein

Download Protein FASTA

1319 aa · TkA08G278990|TK1151|PROTEIN

MADLLVGFASNVLAKLGEKLFVATGRHLRYVLYYNNYIQILEKEVDKLMVKSQDIKREVDIALRNGEIISSEVEQWFSNLDAIYEDSTTFLNTEVPKNKGILNGRFPNIRKRYILSKKAKKKTKKAATLEAETIHKISYPAPPLTVGDRSIGDFKNFESRTPTINRLMDLLKDETRQIISICGMGGSGKTTMVKEVARRVKGDKLFDEIVLALVSKEHDLWKVQEDLGNELGLRFKTTTFKGRANELWKRLLQSKKGNLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G278990
TK1151 IDTkA08G278990
OH-1004 IDLXL04_035536
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)29.900
Protein coverage (%)TK1151 86.657 / OH-1004 84.942
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G278990
LocationChr08:72517140-72522477 (+)
DescriptionSimilar to At4g27220: Probable disease resistance protein At4g27220
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27190 Disease resistance protein. No verified direct reference in this release
At4g27220 Probable disease resistance protein. No verified direct reference in this release
At4g10780 Potential disease resistance protein. No verified direct reference in this release
At1g61300 Probable disease resistance protein. No verified direct reference in this release
At1g61180 Involved in disease resistance via the salicylic acid (SA) signaling pathway. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035536 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0006952 defense response Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0012501 programmed cell death Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0000166 nucleotide binding Molecular Function
KEGG gene cross-reference
ath:AT1G12220
ath:AT4G26090
ath:AT4G27190
ath:AT4G27220
ath:AT5G05400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.616
Rank 1 · TkA08G278990 · TK1151
Cytoplasm0.243
Rank 2 · TkA08G278990 · TK1151
Nucleus0.182
Rank 3 · TkA08G278990 · TK1151
Endoplasmic reticulum0.099
Rank 4 · TkA08G278990 · TK1151
Extracellular0.037
Rank 5 · TkA08G278990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23598LRR_1427-49 aa
PF01637ATPase_229-74 aa
PF25199nSTAND_NTPase548-91 aa
PF13245AAA_19116-144 aa
PF13604AAA_30116-139 aa
PF00730HhH-GPD154-255 aa
PF01637ATPase_2159-352 aa
PF13191AAA_16160-208 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G278990PF23598LRR_1427496.6e-0625.8
TkA08G278990PF01637ATPase_229743.7e-0730.9
TkA08G278990PF25199nSTAND_NTPase548910.03414.7
TkA08G278990PF13245AAA_191161440.1512.9
TkA08G278990PF13604AAA_301161390.1912.1
TkA08G278990PF00730HhH-GPD1542550.2912.2
TkA08G278990PF01637ATPase_21593523.7e-0730.9
TkA08G278990PF13191AAA_161602080.000621.1
TkA08G278990PF20720nSTAND31612710.01316.0
TkA08G278990PF25201nSTAND61622010.2412.1
TkA08G278990PF00931NB-ARC1633263.4e-29102.3
TkA08G278990PF25199nSTAND_NTPase51682010.03414.7
TkA08G278990PF03215Rad171691990.07413.7
TkA08G278990PF13401AAA_221742650.000222.4
TkA08G278990PF13604AAA_301742160.1912.1
TkA08G278990PF13173AAA_141762670.06913.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9T048Arabidopsis thalianasp|Q9T048|DRL27_ARATH Disease resistance protein At4g2719028.000%Swiss-ProtLow
O81825Arabidopsis thalianasp|O81825|DRL28_ARATH Probable disease resistance protein At4g2722024.900%Swiss-ProtLow
O82484Arabidopsis thalianasp|O82484|DRL23_ARATH Putative disease resistance protein At4g1078025.800%Swiss-ProtLow
O64790Arabidopsis thalianasp|O64790|DRL17_ARATH Probable disease resistance protein At1g6130027.400%Swiss-ProtLow
Q940K0Arabidopsis thalianasp|Q940K0|UNI_ARATH Disease resistance protein UNI26.100%Swiss-ProtLow

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