LXL04_035536 | RubberDandelionOmics

Gene overview

LXL04_035536

Reference: OH-1004 Chr: Chr08 Coordinates: 24284141-24289566 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4386 bp · LXL04_035536|LXL04_035536|OH1004|cDNA

ATGACGCCTGTAGATATTGCTGTTTCTGTTTTGGCAAAGCTGCTTGAATATATTGCTCGTCCAATCGTACAGCCGTTTGATTACATTTTTCACCATAATACCAACATTAATGGTTTAAGAAACCGGATGTTGTGTCTGGAAAATACTCGAACCGGGGTCCATCGTCAGGTGCATATAGCTGAAAGGAATGGAGACCTTGTTCTCCCAAACGTACAAGATTGGCTTGCCAAAGCAAATGGTTTAGCAACAGAATCTCAGAA...

CDS

Download CDS FASTA

4386 bp · LXL04_035536|LXL04_035536|OH1004|CDS

ATGACGCCTGTAGATATTGCTGTTTCTGTTTTGGCAAAGCTGCTTGAATATATTGCTCGTCCAATCGTACAGCCGTTTGATTACATTTTTCACCATAATACCAACATTAATGGTTTAAGAAACCGGATGTTGTGTCTGGAAAATACTCGAACCGGGGTCCATCGTCAGGTGCATATAGCTGAAAGGAATGGAGACCTTGTTCTCCCAAACGTACAAGATTGGCTTGCCAAAGCAAATGGTTTAGCAACAGAATCTCAGAA...

Protein

Download Protein FASTA

1461 aa · LXL04_035536|LXL04_035536|OH1004|PROTEIN

MTPVDIAVSVLAKLLEYIARPIVQPFDYIFHHNTNINGLRNRMLCLENTRTGVHRQVHIAERNGDLVLPNVQDWLAKANGLATESQNFLSDEVDRNHRCFSGSCPDLKLIYKSSREAKKKRAAVDELVERGKFDYVSQPARRPPIWPSIAVAATTSLGDLDGFESRKSQLRSTMEALEDDNVNIIGVYGMGGIGKTTFVEEVARQADALQLFDEMVMMVVSHKPNLKKLQGDLAEMLELNLKEEGELLRTARLRERLNQV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035536`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035536

Location Chr08:24284141-24289566 (-)

Description Similar to At4g27220: Probable disease resistance protein At4g27220

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g27220`	Probable disease resistance protein.	No verified direct reference in this release
`At4g27190`	Disease resistance protein.	No verified direct reference in this release
`At4g26090`	Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae.	No verified direct reference in this release
`At5g05400`	Potential disease resistance protein.	No verified direct reference in this release
`At1g12220`	Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035536 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process

GO:0006952 defense response Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0012501 programmed cell death Biological Process

GO:0016045 detection of bacterium Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0000166 nucleotide binding Molecular Function

KEGG gene cross-reference

ath:AT1G12220

ath:AT4G26090

ath:AT4G27190

ath:AT4G27220

ath:AT5G05400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.472

Rank 1 · LXL04_035536 · OH-1004

Cytoplasm0.333

Rank 2 · LXL04_035536 · OH-1004

Nucleus0.230

Rank 3 · LXL04_035536 · OH-1004

Endoplasmic reticulum0.103

Rank 4 · LXL04_035536 · OH-1004

Lysosome / Vacuole0.036

Rank 5 · LXL04_035536 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00931.29NB-ARC170-331 aa

PF23598.2LRR_14586-714 aa

PF23598.2LRR_14784-1071 aa

PF23247.2LRR_RPS2795-912 aa

PF23247.2LRR_RPS2967-1113 aa

PF23247.2LRR_RPS21103-1183 aa

PF23247.2LRR_RPS21198-1343 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035536	`PF00931.29`	NB-ARC	170	331	9.6e-33	113.9
LXL04_035536	`PF23598.2`	LRR_14	586	714	2.8e-11	43.5
LXL04_035536	`PF23598.2`	LRR_14	784	1071	2.8e-11	43.5
LXL04_035536	`PF23247.2`	LRR_RPS2	795	912	3.7e-86	287.7
LXL04_035536	`PF23247.2`	LRR_RPS2	967	1113	3.7e-86	287.7
LXL04_035536	`PF23247.2`	LRR_RPS2	1103	1183	3.7e-86	287.7
LXL04_035536	`PF23247.2`	LRR_RPS2	1198	1343	3.7e-86	287.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81825`	Arabidopsis thaliana	Probable disease resistance protein At4g27220	31.699%	Swiss-Prot	moderate database homology
`Q9T048`	Arabidopsis thaliana	Disease resistance protein At4g27190	29.873%	Swiss-Prot	weak database homology
`Q42484`	Arabidopsis thaliana	Disease resistance protein RPS2	27.728%	Swiss-Prot	weak database homology
`Q9FLB4`	Arabidopsis thaliana	Putative disease resistance protein At5g05400	27.217%	Swiss-Prot	weak database homology
`O64973`	Arabidopsis thaliana	Disease resistance protein RPS5	27.897%	Swiss-Prot	weak database homology

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