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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G258780
Reference: TK1151 Chr: Chr08 Coordinates: 67459734-67462874 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2855 bp · TkA08G258780|TK1151|cDNA

AGAAAATCAATGAAAATGTATGCTTTTTTTATCCAAAGTAGATGTTGACTTGGAGAGTTCCTCTATAAAATGCCCTGCTTCCTAATGTGATTATAAATCTAGTCTCACATCAGTCATACATTTCCATCACTTACAATAATGGCTCTTCTCTCCGACTTTGTCAAAGGATCATCTTCTTCATCAATTGATGTATTTGTAAGTTATAGACCTAACGATACTCGTTATGGTTTCACCGATCATCTCCGTAAAGCCCTCCTGGA...

CDS

Download CDS FASTA

2466 bp · TkA08G258780|TK1151|CDS

ATGGCTCTTCTCTCCGACTTTGTCAAAGGATCATCTTCTTCATCAATTGATGTATTTGTAAGTTATAGACCTAACGATACTCGTTATGGTTTCACCGATCATCTCCGTAAAGCCCTCCTGGATTCCAATATCTCTACCTTTGTGGATGATGAAGATATTGAAACCGGAGAATTTCTGAAACCTGAATTGGTGGGTGCGATTAAAGCATCTAGGGCTTCTATTATCGTGTTTTCCAATAACTACGCGGATTCAGCATGGTG...

Protein

Download Protein FASTA

821 aa · TkA08G258780|TK1151|PROTEIN

MALLSDFVKGSSSSSIDVFVSYRPNDTRYGFTDHLRKALLDSNISTFVDDEDIETGEFLKPELVGAIKASRASIIVFSNNYADSAWCLDELVLILEQHRESNQLVIPIFYHVDPRHIRHQTDTIAVAMTKHSKYMMAEKDAEKNRVAAQRLNGWIQALSALASLAGIKWECSDRLESEFIKEVVKYICRRLHVPKWSAMPQLIGIDDSIKYVTSWLKDGSSDILAILGMGGIGKTSLARYVYGLHSYDFDTSSFIGDIGT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G258780
TK1151 IDTkA08G258780
OH-1004 IDLXL04_033531
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)58.800
Protein coverage (%)TK1151 99.635 / OH-1004 42.943
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G258780
LocationChr08:67459734-67462874 (-)
DescriptionSimilar to PYRD: Dihydroorotate dehydrogenase (quinone), mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g12010 TIR-NB-LRR receptor-like protein involved in plant defense.
Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.2017 · DOI: 10.1016/j.chom.2017.03.005

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033531 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process Biological Process
GO:0006225 UDP biosynthetic process Biological Process
GO:0009220 pyrimidine ribonucleotide biosynthetic process Biological Process
GO:0009410 response to xenobiotic stimulus Biological Process
GO:0031000 response to caffeine Biological Process
GO:0042594 response to starvation Biological Process
GO:0044205 'de novo' UMP biosynthetic process Biological Process
GO:0090140 regulation of mitochondrial fission Biological Process
GO:1903576 response to L-arginine Biological Process
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT5G23300
azc:AZC_4640
dosa:Os04g0676300
mmu:56749
rno:65156
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.386
Rank 1 · TkA08G258780 · TK1151
Cytoplasm0.377
Rank 2 · TkA08G258780 · TK1151
Nucleus0.252
Rank 3 · TkA08G258780 · TK1151
Endoplasmic reticulum0.083
Rank 4 · TkA08G258780 · TK1151
Plastid0.041
Rank 5 · TkA08G258780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582TIR17-191 aa
PF13676TIR_218-114 aa
PF00931NB-ARC207-380 aa
PF01637ATPase_2208-317 aa
PF24883NPHP3_N212-243 aa
PF13191AAA_16218-246 aa
PF13401AAA_22222-316 aa
PF00005ABC_tran222-249 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G258780PF01582TIR171919e-38130.6
TkA08G258780PF13676TIR_2181147.5e-1659.4
TkA08G258780PF00931NB-ARC2073803.6e-1556.7
TkA08G258780PF01637ATPase_22083171.3e-0525.8
TkA08G258780PF24883NPHP3_N2122430.003118.5
TkA08G258780PF13191AAA_162182460.2412.6
TkA08G258780PF13401AAA_222223160.09313.8
TkA08G258780PF00005ABC_tran2222490.2212.9
TkA08G258780PF05729NACHT2233480.113.1
TkA08G258780PF23282WHD_ROQ14505215e-2072.2
TkA08G258780PF13401AAA_224585200.09313.8
TkA08G258780PF13676TIR_25025517.5e-1659.4
TkA08G258780PF13855LRR_85665842.8e-0937.3
TkA08G258780PF25013LRR_Zer-15716410.000520.9
TkA08G258780PF25019LRR_R13L1-DRL215715842.78.6
TkA08G258780PF23286LRR_135836020.0004220.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SZ66Arabidopsis thalianasp|Q9SZ66|DSC1_ARATH Disease resistance-like protein DSC131.200%Swiss-ProtMedium

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