RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G227190
Reference: TK1151 Chr: Chr08 Coordinates: 59151022-59155764 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2431 bp · TkA08G227190|TK1151|cDNA

TTTGGACATGATGTCGAAAACAGCCCCTATAAATACAATGCCATTTATTTAAAAAATGGAAAACCGTCAATAGATTTCCGATAAAGTCAACAATTCCAGAGAGAGAAAGCAGAGTGTCGGAGAGAGAAGAATCGTGGACTGCTGATTTCTGTGATGCGTGGAAGCAGGTGGCAGAACAATGAAGAGATCTCGGTGGAAACTTTCTTCTTATTAAAATGGCAACTCCTCACTCCATCCGAACCCTAGCGCCAAATCCCTCT...

CDS

Download CDS FASTA

1932 bp · TkA08G227190|TK1151|CDS

ATGACGGAGGTAGCGAAATTGCTGTACATAGTGGTGGAGGAGGATGAAGAAACGAAAGGGAATGAAGAATCGTCATTTAGATACACGCGTCCTGTTCTTCAGAGCACTTTGCAGTTAATGGGATGTAAAGCACGTCACGCCTTCAAGATAAGCCAGAGAGTATTCGAAATCATGAGAAATAAATGCTTAGAGGACACTTTGGCAGACATAGGTGTAATTCAATGGGGAAAAGATTTCTTCAAAGTTCATCCTCTATCTGA...

Protein

Download Protein FASTA

643 aa · TkA08G227190|TK1151|PROTEIN

MTEVAKLLYIVVEEDEETKGNEESSFRYTRPVLQSTLQLMGCKARHAFKISQRVFEIMRNKCLEDTLADIGVIQWGKDFFKVHPLSDKMNTSNHVISEKDGKPFESYKKRTTIVIKRSRFIDVVCDALSEYKYIGPNQRADFLLACRIRERKESVTVLLCGTSGCGKSTLSALLASRLGITTVISTDSIRHMMRSFVDEKQNPLLWSSTYHAGEHLDPVAVSEAKAKKKATKESTDHPVTKEASSLTTVDLISPKQMAIE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA08G227190
TK1151 IDTkA08G227190
OH-1004 IDLXL04_033042
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)95.000
Protein coverage (%)TK1151 99.844 / OH-1004 99.852
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G227190
LocationChr08:59151022-59155764 (-)
DescriptionSimilar to At3g45090: P-loop NTPase domain-containing protein LPA1 homolog 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g45090 May be not required for the accumulation of phytic acid in seeds.
Genetic analysis of two OsLpa1-like genes in Arabidopsis reveals that only one is required for wild-type seed phytic acid levels.2010 · DOI: 10.1007/s00425-010-1243-5
At5g60760 Required for the accumulation of phytic acid in seeds.
Genetic analysis of two OsLpa1-like genes in Arabidopsis reveals that only one is required for wild-type seed phytic acid levels.2010 · DOI: 10.1007/s00425-010-1243-5

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0819400 Required for the accumulation of phytic acid in seeds.
The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism.2008 · DOI: 10.1007/s00122-008-0818-z
Os09g0572200 Required for the accumulation of phytic acid in seeds. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_033042 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010264 myo-inositol hexakisphosphate biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT3G45090
ath:AT5G60760
ddi:DDB_G0273453
ddi:DDB_G0273565
dosa:Os02g0819400
dosa:Os09g0572200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.447
Rank 1 · TkA08G227190 · TK1151
Nucleus0.426
Rank 2 · TkA08G227190 · TK1151
Cell membrane0.117
Rank 3 · TkA08G227190 · TK1151
Golgi apparatus0.071
Rank 4 · TkA08G227190 · TK1151
Endoplasmic reticulum0.064
Rank 5 · TkA08G227190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28345LPA1_N10-151 aa
PF01583APS_kinase89-126 aa
PF03215Rad17148-182 aa
PF20703nSTAND1148-284 aa
PF03193RsgA_GTPase149-182 aa
PF05496RuvB_N149-184 aa
PF06414Zeta_toxin150-211 aa
PF24883NPHP3_N151-274 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G227190PF28345LPA1_N101511.3e-53181.6
TkA08G227190PF01583APS_kinase891260.08213.7
TkA08G227190PF03215Rad171481820.00417.8
TkA08G227190PF20703nSTAND11482840.2611.6
TkA08G227190PF03193RsgA_GTPase1491820.006317.1
TkA08G227190PF05496RuvB_N1491840.05513.9
TkA08G227190PF06414Zeta_toxin1502110.003917.4
TkA08G227190PF24883NPHP3_N1512740.01316.4
TkA08G227190PF02367TsaE1511840.1113.2
TkA08G227190PF015916PF2K1521761.09.3
TkA08G227190PF20720nSTAND31531990.02315.1
TkA08G227190PF01583APS_kinase1541920.08213.7
TkA08G227190PF13555AAA_291541700.1113.0
TkA08G227190PF00005ABC_tran1551780.01117.0
TkA08G227190PF13671AAA_331572044.3e-0731.0
TkA08G227190PF13238AAA_181572012.1e-0628.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93ZS1Arabidopsis thalianasp|Q93ZS1|LPAH2_ARATH P-loop NTPase domain-containing protein LPA1 homolog 261.800%Swiss-ProtHigh
Q9FJH9Arabidopsis thalianasp|Q9FJH9|LPAH1_ARATH P-loop NTPase domain-containing protein LPA1 homolog 158.200%Swiss-ProtHigh
B9F4I8Oryza sativa subsp. japonicasp|B9F4I8|LPA1_ORYSJ P-loop NTPase domain-containing protein LPA161.600%Swiss-ProtHigh
Q651A1Oryza sativa subsp. japonicasp|Q651A1|LPA1H_ORYSJ P-loop NTPase domain-containing protein LPA1 homolog58.400%Swiss-ProtHigh

JBrowse

View in Genome Browser