TkA08G162270 | RubberDandelionOmics

Gene overview

TkA08G162270

Reference: TK1151 Chr: Chr08 Coordinates: 42358406-42359369 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

884 bp · TkA08G162270|TK1151|cDNA

AAACACAAAAAGAAAGGCCGCATATGGTAAACATGCTTTCCCTCTTTCATCAAATTATTATAATGATTTAAACCAAAACCTCACTATCCAAAGTCTCTTTAAATATCCTCCATCGTCTCTTTCCTCTGAGCTAAACTAAAAAGAAACAGCATGATCTCCATGGCCATGGGTTCATTGTTCAAAGTAAACGAGTCCACCAAGACACCATCCATGGAGTACTCAAAAGCTGTTGGATTGAAGATTCTCACCACTAAAACCCC...

CDS

Download CDS FASTA

474 bp · TkA08G162270|TK1151|CDS

ATGATCTCCATGGCCATGGGTTCATTGTTCAAAGTAAACGAGTCCACCAAGACACCATCCATGGAGTACTCAAAAGCTGTTGGATTGAAGATTCTCACCACTAAAACCCCCCACCTTCATCATTCCAGACCCATTTTTCAAAGGAATCAAATTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGGTTCCATATGTTTCATCAAATCTTGCCTTCTATGCCACAAACATATTTCTCTTAACAAAGAGGT...

Protein

Download Protein FASTA

157 aa · TkA08G162270|TK1151|PROTEIN

MISMAMGSLFKVNESTKTPSMEYSKAVGLKILTTKTPHLHHSRPIFQRNQIPSSSSSSSSSSSSSGSICFIKSCLLCHKHISLNKEVYMYRGDQSFCSEECRSRQIYIDDVKQLEITTKKMIQQYRQSSKKTRTHFRKNRNPWRRRYFACRAWFLIF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G162270`
TK1151 ID	TkA08G162270
OH-1004 ID	LXL04_032267
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.100
Protein coverage (%)	TK1151 87.898 / OH-1004 91.837 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G162270

Location Chr08:42358406-42359369 (+)

Description Similar to FLZ18: FCS-Like Zinc finger 18

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g44670`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At4g17670`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At5g47060`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At5g65040`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At5g49120`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032267 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009646 response to absence of light Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0034097 response to cytokine Biological Process

GO:0042594 response to starvation Biological Process

GO:0071368 cellular response to cytokinin stimulus Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:1902074 response to salt Biological Process

GO:1905582 response to mannose Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G53885

ath:AT1G53903

ath:AT2G44670

ath:AT4G17670

ath:AT5G47060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.729

Rank 1 · TkA08G162270 · TK1151

Cytoplasm0.314

Rank 2 · TkA08G162270 · TK1151

Cell membrane0.053

Rank 3 · TkA08G162270 · TK1151

Endoplasmic reticulum0.031

Rank 4 · TkA08G162270 · TK1151

Mitochondrion0.017

Rank 5 · TkA08G162270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23740Ig_ZP2_3rd7-60 aa

PF11928DUF344645-120 aa

PF10500SR-2546-69 aa

PF30675FAM13348-66 aa

PF24232DUF744549-102 aa

PF04570zf-FLZ62-110 aa

PF11008DUF284686-124 aa

PF23740Ig_ZP2_3rd96-112 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G162270	`PF23740`	Ig_ZP2_3rd	7	60	0.15	12.9
TkA08G162270	`PF11928`	DUF3446	45	120	0.0026	18.6
TkA08G162270	`PF10500`	SR-25	46	69	2.2	8.5
TkA08G162270	`PF30675`	FAM133	48	66	7.4	7.6
TkA08G162270	`PF24232`	DUF7445	49	102	0.2	12.6
TkA08G162270	`PF04570`	zf-FLZ	62	110	7.3e-19	67.7
TkA08G162270	`PF11008`	DUF2846	86	124	0.025	15.5
TkA08G162270	`PF23740`	Ig_ZP2_3rd	96	112	0.15	12.9
TkA08G162270	`PF30675`	FAM133	119	138	7.4	7.6
TkA08G162270	`PF10500`	SR-25	127	127	2.2	8.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80506`	Arabidopsis thaliana	sp\|O80506\|FLZ3_ARATH FCS-Like Zinc finger 3	46.900%	Swiss-Prot	Low
`Q8VZM9`	Arabidopsis thaliana	sp\|Q8VZM9\|FLZ2_ARATH FCS-Like Zinc finger 2	36.100%	Swiss-Prot	Medium
`Q9FGQ9`	Arabidopsis thaliana	sp\|Q9FGQ9\|FLZ1_ARATH FCS-Like Zinc finger 1	54.500%	Swiss-Prot	Low
`Q9LV75`	Arabidopsis thaliana	sp\|Q9LV75\|IRM1_ARATH Protein INCREASED RESISTANCE TO MYZUS PERSICAE 1	43.600%	Swiss-Prot	Low
`Q9FH22`	Arabidopsis thaliana	sp\|Q9FH22\|FLZ15_ARATH FCS-Like Zinc finger 15	44.400%	Swiss-Prot	Low

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