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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G130900
Reference: TK1151 Chr: Chr08 Coordinates: 33973980-33976333 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1388 bp · TkA08G130900|TK1151|cDNA

ATGGGGGGATGGCGATTTGAAGAAGATCGTGAGATAACTTTTCCTCACACTCTTGTTTTGATTGGAAAGACTGGAAACGGGAAAAACGCTACAGGGAATACCATTCTAGGAAAGCAATTGTTTCGATCTTTGCGTAGTTTATCTGCTATAACAATTACCTCAGAGTTGAAGACAACTACACTGGAAAAGGGCCAGCCTCTTAACGTTATCGATACTCCTGGTTTATTTGATTCATCTACAGCTGTCGAGTTTATTAAGAA...

CDS

Download CDS FASTA

1188 bp · TkA08G130900|TK1151|CDS

ATGGGGGGATGGCGATTTGAAGAAGATCGTGAGATAACTTTTCCTCACACTCTTGTTTTGATTGGAAAGACTGGAAACGGGAAAAACGCTACAGGGAATACCATTCTAGGAAAGCAATTGTTTCGATCTTTGCGTAGTTTATCTGCTATAACAATTACCTCAGAGTTGAAGACAACTACACTGGAAAAGGGCCAGCCTCTTAACGTTATCGATACTCCTGGTTTATTTGATTCATCTACAGCTGTCGAGTTTATTAAGAA...

Protein

Download Protein FASTA

395 aa · TkA08G130900|TK1151|PROTEIN

MGGWRFEEDREITFPHTLVLIGKTGNGKNATGNTILGKQLFRSLRSLSAITITSELKTTTLEKGQPLNVIDTPGLFDSSTAVEFIKKEIVNCINMAKDGFNAFLVVISVRMRFAEDDKAAINSMVDLFGRKFYNYTIIVFTGGDELEYFEESFRDFLKNSPESLKDALHQCRNRCVLFDNKTDDLTKRANQLKKLFSLVNAVSRANGGKPYTYELFTGLKFESRLKETTLKLEQLLEKECTARLMTNKEIINVEMTLNET...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G130900
TK1151 IDTkA08G130900
OH-1004 IDLXL04_031809
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G130900
LocationChr08:33973980-33976333 (-)
DescriptionSimilar to IAN9: Immune-associated nucleotide-binding protein 9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g33970 Immune-associated nucleotide-binding protein 9. No verified direct reference in this release
At1g33900 Immune-associated nucleotide-binding protein 4. No verified direct reference in this release
At1g33950 Immune-associated nucleotide-binding protein 7. No verified direct reference in this release
At2g26820 Immune-associated nucleotide-binding protein 10. No verified direct reference in this release
At1g33960 Immune-associated nucleotide-binding protein 8. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031809 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0030968 endoplasmic reticulum unfolded protein response Biological Process
GO:0034605 cellular response to heat Biological Process
GO:1900425 negative regulation of defense response to bacterium Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0030246 carbohydrate binding Molecular Function
KEGG gene cross-reference
ath:AT1G33900
ath:AT1G33950
ath:AT1G33970
ath:AT2G26820
ath:AT4G09940
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.606
Rank 1 · TkA08G130900 · TK1151
Cell membrane0.226
Rank 2 · TkA08G130900 · TK1151
Nucleus0.188
Rank 3 · TkA08G130900 · TK1151
Mitochondrion0.111
Rank 4 · TkA08G130900 · TK1151
Endoplasmic reticulum0.098
Rank 5 · TkA08G130900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04548AIG117-223 aa
PF01926MMR_HSR118-119 aa
PF00009GTP_EFTU50-77 aa
PF28589GH172_dom100-131 aa
PF09346SMI1_KNR4131-158 aa
PF00009GTP_EFTU173-197 aa
PF28164AmcA_3a223-245 aa
PF22905Hydro_N_hd231-289 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G130900PF04548AIG1172231.6e-64217.8
TkA08G130900PF01926MMR_HSR1181190.0001222.8
TkA08G130900PF00009GTP_EFTU50777.86.8
TkA08G130900PF28589GH172_dom1001312.28.6
TkA08G130900PF09346SMI1_KNR41311582.99.3
TkA08G130900PF00009GTP_EFTU1731977.86.8
TkA08G130900PF28164AmcA_3a2232454.38.7
TkA08G130900PF22905Hydro_N_hd2312897.27.2
TkA08G130900PF28217FAM81B2522963.77.4
TkA08G130900PF04548AIG12532941.6e-64217.8
TkA08G130900PF28164AmcA_3a2562824.38.7
TkA08G130900PF28589GH172_dom2693152.28.6
TkA08G130900PF09346SMI1_KNR42893172.99.3
TkA08G130900PF28217FAM81B3033793.77.4
TkA08G130900PF28164AmcA_3a3063364.38.7
TkA08G130900PF28589GH172_dom3353602.28.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4HT21Arabidopsis thalianasp|F4HT21|IAN9_ARATH Immune-associated nucleotide-binding protein 939.200%Swiss-ProtMedium
Q9C8U7Arabidopsis thalianasp|Q9C8U7|IAN4_ARATH Immune-associated nucleotide-binding protein 440.400%Swiss-ProtMedium
Q9C8V2Arabidopsis thalianasp|Q9C8V2|IAN7_ARATH Immune-associated nucleotide-binding protein 739.400%Swiss-ProtMedium
O81025Arabidopsis thalianasp|O81025|IAN10_ARATH Immune-associated nucleotide-binding protein 1040.600%Swiss-ProtMedium
P54120Arabidopsis thalianasp|P54120|IAN8_ARATH Immune-associated nucleotide-binding protein 841.400%Swiss-ProtMedium

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