TkA08G125960 | RubberDandelionOmics

Gene overview

TkA08G125960

Reference: TK1151 Chr: Chr08 Coordinates: 32732522-32734111 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1492 bp · TkA08G125960|TK1151|cDNA

CCAGAATTCAAGCAAACTCCATGTGGAGTGCATGGACATATGCAGTTGCAACGGGTTTCAGTATAAATTCGATAAGCTACAAGGGATCTATCTTTGTTACCCTAAATTTCTCTTGCTGAATGGATTCAGCTCGGTTAGTTTCCTTGGTTCATTTTATCTAAGAGCGCCAAAAGTTACGCTATCTTCTAGTACCATTAAAGCTACTCGCGAACTTGGATTAAACTGTTCTGGGAATCCTAGGATCGTAGAATTGGAACGAG...

CDS

Download CDS FASTA

1281 bp · TkA08G125960|TK1151|CDS

ATGGACATATGCAGTTGCAACGGGTTTCAGTATAAATTCGATAAGCTACAAGGGATCTATCTTTGTTACCCTAAATTTCTCTTGCTGAATGGATTCAGCTCGGTTAGTTTCCTTGGTTCATTTTATCTAAGAGCGCCAAAAGTTACGCTATCTTCTAGTACCATTAAAGCTACTCGCGAACTTGGATTAAACTGTTCTGGGAATCCTAGGATCGTAGAATTGGAACGAGTTTATGAAAAGAAGAACGAAAGAGGGTCAAT...

Protein

Download Protein FASTA

426 aa · TkA08G125960|TK1151|PROTEIN

MDICSCNGFQYKFDKLQGIYLCYPKFLLLNGFSSVSFLGSFYLRAPKVTLSSSTIKATRELGLNCSGNPRIVELERVYEKKNERGSIKFLQLFTYVFGALEIVCIIYFFYKTRKSATKSQGYLQAATTGFERFSYRDLKKASENFSMEVGRGGGAVVYKGVLTDNRIAAIKRLKEANSNQGEAEFLAEISTLGRLNHMNLIDIWGYCAEGKHRILVYEYMENGSLADNLHSDNLNWDKRFEVAVGAAKGLAYLHEECLEW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA08G125960`
TK1151 ID	TkA08G125960
OH-1004 ID	LXL04_031722
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 52.919 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA08G125960

Location Chr08:32732522-32734111 (-)

Description Similar to PK1: Putative receptor protein kinase ZmPK1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g00340`	Serine/threonine-protein kinase.	No verified direct reference in this release
`At1g34300`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300.	No verified direct reference in this release
`At5g24080`	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080.	No verified direct reference in this release
`At4g32300`	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031722 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0051707 response to other organism Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT2G19130

ath:AT4G00340

ath:AT5G24080

zma:542378

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.747

Rank 1 · TkA08G125960 · TK1151

Endoplasmic reticulum0.115

Rank 2 · TkA08G125960 · TK1151

Cytoplasm0.108

Rank 3 · TkA08G125960 · TK1151

Nucleus0.081

Rank 4 · TkA08G125960 · TK1151

Golgi apparatus0.040

Rank 5 · TkA08G125960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase64-83 aa

PF07714PK_Tyr_Ser-Thr146-420 aa

PF00069Pkinase147-418 aa

PF17667Pkinase_fungal151-190 aa

PF03109ABC1156-174 aa

PF03109ABC1211-295 aa

PF12260PIP49_C213-284 aa

PF17667Pkinase_fungal246-313 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA08G125960	`PF00069`	Pkinase	64	83	8.1e-47	160.5
TkA08G125960	`PF07714`	PK_Tyr_Ser-Thr	146	420	7.1e-40	137.7
TkA08G125960	`PF00069`	Pkinase	147	418	8.1e-47	160.5
TkA08G125960	`PF17667`	Pkinase_fungal	151	190	0.31	10.4
TkA08G125960	`PF03109`	ABC1	156	174	0.0068	16.3
TkA08G125960	`PF03109`	ABC1	211	295	0.0068	16.3
TkA08G125960	`PF12260`	PIP49_C	213	284	0.049	13.9
TkA08G125960	`PF17667`	Pkinase_fungal	246	313	0.31	10.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39203`	Arabidopsis thaliana	sp\|Q39203\|SD22_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2	38.900%	Swiss-Prot	Medium
`Q9XID3`	Arabidopsis thaliana	sp\|Q9XID3\|Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	38.600%	Swiss-Prot	Medium
`Q9FLV4`	Arabidopsis thaliana	sp\|Q9FLV4\|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080	42.900%	Swiss-Prot	Medium
`Q8RWZ5`	Arabidopsis thaliana	sp\|Q8RWZ5\|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	43.200%	Swiss-Prot	Medium

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