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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G119270
Reference: TK1151 Chr: Chr08 Coordinates: 31052339-31056303 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

786 bp · TkA08G119270|TK1151|cDNA

ATGCACTCCGGCTTCATCTACTGGGCTGCTAGGGCTTCTTCTTCGCGATTTGATGATATTTTTGATGTTTTTAGATCCGACGATCCTTCTTCGGTAAAGAAATTTCCGGCATCTTCAGTACGCCACCGGTCTGCTTCGGGCTTCTTCTTCGGCATCTGCACTCCGGCTTCATCTACCGGGCTGCTAGGGCTTCTTCTTCGCTTCTTTGCCTGCTTCGGACTCTTCATCTACGACTTTCAGATAACAGAGAAAGATGAAGA...

CDS

Download CDS FASTA

786 bp · TkA08G119270|TK1151|CDS

ATGCACTCCGGCTTCATCTACTGGGCTGCTAGGGCTTCTTCTTCGCGATTTGATGATATTTTTGATGTTTTTAGATCCGACGATCCTTCTTCGGTAAAGAAATTTCCGGCATCTTCAGTACGCCACCGGTCTGCTTCGGGCTTCTTCTTCGGCATCTGCACTCCGGCTTCATCTACCGGGCTGCTAGGGCTTCTTCTTCGCTTCTTTGCCTGCTTCGGACTCTTCATCTACGACTTTCAGATAACAGAGAAAGATGAAGA...

Protein

Download Protein FASTA

261 aa · TkA08G119270|TK1151|PROTEIN

MHSGFIYWAARASSSRFDDIFDVFRSDDPSSVKKFPASSVRHRSASGFFFGICTPASSTGLLGLLLRFFACFGLFIYDFQITEKDEDALKYLKDIKCFDQKYHMIEDDEPILEKTTGTNIEWLPGKCLTQKTLKKSQKRGQRMLGLLQRLSFFNVFNPIQVPEDEDDMDDEEAEDIQNQMEQDYDIGSTIRENIIPHAVSWFRGEAVQQDEFDGDEDDDEDDDEDEDDDEDEEEEEDKSKSKSKRKTKKGGPGPPACWRY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G119270
TK1151 IDTkA08G119270
OH-1004 IDLXL04_032201
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)54.300
Protein coverage (%)TK1151 51.724 / OH-1004 43.272
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G119270
LocationChr08:31052339-31056303 (+)
DescriptionSimilar to NAP1;2: Nucleosome assembly protein 1;2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g56950 May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity).
Molecular and reverse genetic characterization of NUCLEOSOME ASSEMBLY PROTEIN1 (NAP1) genes unravels their function in transcription and nucleotide excision repair in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03844.x
A truncated Arabidopsis NUCLEOSOME ASSEMBLY PROTEIN 1, AtNAP1;3T, alters plant growth responses to abscisic acid and salt in the Atnap1;3-2 mutant.2009 · DOI: 10.1093/mp/ssp026
At2g19480 May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity).
Molecular and reverse genetic characterization of NUCLEOSOME ASSEMBLY PROTEIN1 (NAP1) genes unravels their function in transcription and nucleotide excision repair in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2009.03844.x

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8AW64 May modulate chromatin structure by regulation of nucleosome assembly/disassembly. No verified direct reference in this release
Os05g0539700 May modulate chromatin structure by regulation of nucleosome assembly/disassembly. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032201 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006281 DNA repair Biological Process
GO:0006334 nucleosome assembly Biological Process
GO:0009294 DNA-mediated transformation Biological Process
GO:0016444 somatic cell DNA recombination Biological Process
GO:0000785 chromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009536 plastid Cellular Component
GO:0003682 chromatin binding Molecular Function
KEGG gene cross-reference
ath:AT2G19480
ath:AT5G56950
dosa:Os05g0539700
nta:107760768
osa:4339460
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.505
Rank 1 · TkA08G119270 · TK1151
Nucleus0.446
Rank 2 · TkA08G119270 · TK1151
Mitochondrion0.129
Rank 3 · TkA08G119270 · TK1151
Cell membrane0.081
Rank 4 · TkA08G119270 · TK1151
Extracellular0.067
Rank 5 · TkA08G119270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00956NAP80-99 aa
PF11719Drc1-Sld283-249 aa
PF11705RNA_pol_3_Rpc3186-237 aa
PF00956NAP103-205 aa
PF06390NESP55103-176 aa
PF05477SURF2114-251 aa
PF04147Nop14137-243 aa
PF05764YL1138-248 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G119270PF00956NAP80996.6e-30105.0
TkA08G119270PF11719Drc1-Sld2832490.007116.8
TkA08G119270PF11705RNA_pol_3_Rpc31862376.37.5
TkA08G119270PF00956NAP1032056.6e-30105.0
TkA08G119270PF06390NESP551031760.2911.4
TkA08G119270PF05477SURF21142510.07813.2
TkA08G119270PF04147Nop141372430.2910.0
TkA08G119270PF05764YL11382480.002118.9
TkA08G119270PF01398JAB1431900.411.2
TkA08G119270PF15912VIR_N1582380.3910.8
TkA08G119270PF05327RRN31602440.009615.2
TkA08G119270PF09073BUD221642460.004517.1
TkA08G119270PF28211GlpR1642464.48.0
TkA08G119270PF05642Sporozoite_P672052530.09511.5
TkA08G119270PF06390NESP552102550.2911.4
TkA08G119270PF01398JAB2222360.411.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94K07Arabidopsis thalianasp|Q94K07|NAP1C_ARATH Nucleosome assembly protein 1;352.700%Swiss-ProtMedium
Q9ZUP3Arabidopsis thalianasp|Q9ZUP3|NAP1B_ARATH Nucleosome assembly protein 1;251.500%Swiss-ProtMedium
B8AW64Oryza sativa subsp. indicasp|B8AW64|NAP1B_ORYSI Nucleosome assembly protein 1;251.200%Swiss-ProtMedium
Q53WK4Oryza sativa subsp. japonicasp|Q53WK4|NAP1B_ORYSJ Nucleosome assembly protein 1;251.200%Swiss-ProtMedium

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