Gene Card
Gene overview
cDNA / CDS / Protein Sequences
444 bp · TkA08G106720|TK1151|cDNA
ATGCGGTGGTTTTTCTATACTATTCATACCAATATGGCCTCATATATTCCAGCTATTGCCTTCCAATTCCACTACACCGTCCATTTTATCTCTGATGAAATTGGTGAAGAGAAGTCGTTAGAATTAATAGATGTGCGGATGATTATGGAAAACTTGAGTTTGGTCTTGGATGATGAAGATATTGTAAATATCACTTGCATAACAAGTTTGTTTGATGAAAACGAGCCAACCTTTAATGAATTGGAGGAAGCATTTAGTGT...
444 bp · TkA08G106720|TK1151|CDS
ATGCGGTGGTTTTTCTATACTATTCATACCAATATGGCCTCATATATTCCAGCTATTGCCTTCCAATTCCACTACACCGTCCATTTTATCTCTGATGAAATTGGTGAAGAGAAGTCGTTAGAATTAATAGATGTGCGGATGATTATGGAAAACTTGAGTTTGGTCTTGGATGATGAAGATATTGTAAATATCACTTGCATAACAAGTTTGTTTGATGAAAACGAGCCAACCTTTAATGAATTGGAGGAAGCATTTAGTGT...
Protein
Download Protein FASTA147 aa · TkA08G106720|TK1151|PROTEIN
MRWFFYTIHTNMASYIPAIAFQFHYTVHFISDEIGEEKSLELIDVRMIMENLSLVLDDEDIVNITCITSLFDENEPTFNELEEAFSVFDANDDGFIDAKELQLVLSKMGYSCISQSECRRMIDRYDVDRDTKISSKEFLKLIEDAFQ
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA08G106720 |
|---|---|
| TK1151 ID | TkA08G106720 |
| OH-1004 ID | LXL04_031432 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 52.100 |
| Protein coverage (%) | TK1151 76.871 / OH-1004 59.184Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA08G106720 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:27782783-27783226 (+) | |||||||||
| Description | Similar to CML46: Probable calcium-binding protein CML46 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:1900425 negative regulation of defense response to bacterium Biological Process GO:0005737 cytoplasm Cellular Component GO:0009507 chloroplast Cellular Component GO:0005509 calcium ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G05990 ath:AT3G29000 ath:AT3G47480 ath:AT5G39670 dosa:Os04g0492800 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24021ACT_phage24-48 aaPF27486AtcB_N38-73 aaPF13833EF-hand_848-62 aaPF23564EF-hand_FSTL172-147 aaPF21008AIF-176-142 aaPF13499EF-hand_778-142 aaPF13833EF-hand_879-100 aaPF00036EF-hand_180-108 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA08G106720 | PF24021 | ACT_phage | 24 | 48 | 0.079 | 13.3 |
| TkA08G106720 | PF27486 | AtcB_N | 38 | 73 | 0.071 | 13.8 |
| TkA08G106720 | PF13833 | EF-hand_8 | 48 | 62 | 0.008 | 16.6 |
| TkA08G106720 | PF23564 | EF-hand_FSTL1 | 72 | 147 | 1.2e-05 | 26.4 |
| TkA08G106720 | PF21008 | AIF-1 | 76 | 142 | 0.00096 | 20.1 |
| TkA08G106720 | PF13499 | EF-hand_7 | 78 | 142 | 1.1e-10 | 42.4 |
| TkA08G106720 | PF13833 | EF-hand_8 | 79 | 100 | 0.008 | 16.6 |
| TkA08G106720 | PF00036 | EF-hand_1 | 80 | 108 | 2.1e-13 | 49.5 |
| TkA08G106720 | PF13405 | EF-hand_6 | 80 | 109 | 4e-12 | 45.4 |
| TkA08G106720 | PF13202 | EF-hand_5 | 81 | 104 | 3.5e-09 | 36.4 |
| TkA08G106720 | PF10591 | SPARC_Ca_bdg | 82 | 140 | 0.0034 | 18.4 |
| TkA08G106720 | PF00404 | Dockerin_1 | 84 | 104 | 0.00076 | 20.3 |
| TkA08G106720 | PF00404 | Dockerin_1 | 88 | 142 | 0.00076 | 20.3 |
| TkA08G106720 | PF29176 | Allatotropin-like_C | 89 | 101 | 0.0069 | 16.6 |
| TkA08G106720 | PF13833 | EF-hand_8 | 96 | 143 | 0.008 | 16.6 |
| TkA08G106720 | PF24021 | ACT_phage | 101 | 143 | 0.079 | 13.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.