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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G092390
Reference: TK1151 Chr: Chr08 Coordinates: 23924426-23926024 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1506 bp · TkA08G092390|TK1151|cDNA

AAATACTTGGTGTCAAATTTAGAATCATGTGCTGATGTGCCAGCCAATCTACTCTCATACAGGTAATTAATTGCTCCACGCGCACACCCCAAGGACCCTACACTCCTCTGTGGGCTCTTTTCTTGCCACGTCATCATCTTTTTCTTCCGCTTCACGGAATTGCAGCACCACCACTAAATTTACGTTCATTTCCCCGGCATACCCTTCAACAGCGACTGCAATTACAATTTACAACCCTTTATCCATCTTATGACGTTTCT...

CDS

Download CDS FASTA

834 bp · TkA08G092390|TK1151|CDS

ATGGCGACTAGTTTGGTACGTAGAGGTATTTCCAGGCTTCAAACGTCTCCGGCGGCGACACTTTTGCTTTCCCGAGCTCATGCTTCCGGGCCTCAAGCTCAACAATCGGAATCCGCCGCCAGTTCTTCACAAAATCTAAAGAATTTCCAAATCTACCGATGGAATCCGGACAATCCAGCCAAACCGGAGCTACGAAACTACCAGATAAACCTTAAGGAGTGTGGACCGATGGTACTCGATGCACTTATTAAGATCAAGAA...

Protein

Download Protein FASTA

277 aa · TkA08G092390|TK1151|PROTEIN

MATSLVRRGISRLQTSPAATLLLSRAHASGPQAQQSESAASSSQNLKNFQIYRWNPDNPAKPELRNYQINLKECGPMVLDALIKIKNEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSEETTMVTPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKSPAPSGWEGKEIPQSKKDRQKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIMDSRDEYTQERLDAVNDEFKLYRCHTILNCARACP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G092390
TK1151 IDTkA08G092390
OH-1004 IDLXL04_031185
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G092390
LocationChr08:23924426-23926024 (+)
DescriptionSimilar to SDH2-2: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g40650 Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). No verified direct reference in this release
At3g27380 Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0120000 Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031185 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006099 tricarboxylic acid cycle Biological Process
GO:0006121 mitochondrial electron transport, succinate to ubiquinone Biological Process
GO:0009060 aerobic respiration Biological Process
GO:0022904 respiratory electron transport chain Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009536 plastid Cellular Component
GO:0031966 mitochondrial membrane Cellular Component
GO:0045273 respiratory chain complex II (succinate dehydrogenase) Cellular Component
GO:0000104 succinate dehydrogenase activity Molecular Function
GO:0008177 succinate dehydrogenase (quinone) activity Molecular Function
KEGG gene cross-reference
ath:AT3G27380
ath:AT5G40650
dme:Dmel_CG3283
dosa:Os08g0120000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.958
Rank 1 · TkA08G092390 · TK1151
Cytoplasm0.053
Rank 2 · TkA08G092390 · TK1151
Nucleus0.052
Rank 3 · TkA08G092390 · TK1151
Cell membrane0.029
Rank 4 · TkA08G092390 · TK1151
Plastid0.014
Rank 5 · TkA08G092390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13085Fer2_348-151 aa
PF22179RickCE_cat66-88 aa
PF13237Fer4_1085-108 aa
PF00111Fer292-112 aa
PF13534Fer4_17104-109 aa
PF13183Fer4_8104-108 aa
PF12838Fer4_7104-108 aa
PF13746Fer4_18104-117 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G092390PF13085Fer2_3481515.8e-33113.8
TkA08G092390PF22179RickCE_cat66880.04714.8
TkA08G092390PF13237Fer4_10851081.7e-0731.8
TkA08G092390PF00111Fer2921120.03214.9
TkA08G092390PF13534Fer4_171041092.8e-0938.1
TkA08G092390PF13183Fer4_81041087.9e-0936.7
TkA08G092390PF12838Fer4_71041080.1613.2
TkA08G092390PF13746Fer4_181041170.2212.4
TkA08G092390PF13746Fer4_181752040.2212.4
TkA08G092390PF13183Fer4_81892637.9e-0936.7
TkA08G092390PF12838Fer4_71892040.1613.2
TkA08G092390PF00111Fer21901990.03214.9
TkA08G092390PF13534Fer4_171912642.8e-0938.1
TkA08G092390PF13237Fer4_101912601.7e-0731.8
TkA08G092390PF12838Fer4_71922620.1613.2
TkA08G092390PF13746Fer4_182452710.2212.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LB02Arabidopsis thalianasp|Q8LB02|SDHB2_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial79.400%Swiss-ProtHigh
Q8LBZ7Arabidopsis thalianasp|Q8LBZ7|SDHB1_ARATH Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial76.400%Swiss-ProtHigh
Q9S827Oryza sativa subsp. japonicasp|Q9S827|SDHB1_ORYSJ Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial69.700%Swiss-ProtHigh

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