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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G088310
Reference: TK1151 Chr: Chr08 Coordinates: 22867229-22870307 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2787 bp · TkA08G088310|TK1151|cDNA

AAGAAATTAGGGTAACCAATTATGTACCAATGTACTAGTGGGTAGCACTAGCACTCTAGCAGCAGTACAATATAAAAGACAAAACCCCCAAATAATAGAGGTCTGTGTGTGTAGCCAATTAGATTTCGCAGATGAATAAAGAGCCAGTGATATAGAACAAGAGGGCATGGAGAATCCCTATGTACACTTTTGTAGAAAGAGAGTGAGAAGAAAAAACCACCTAAATTATTAGTTTCAATCGTCTTTCCTCCTAAATTTAG...

CDS

Download CDS FASTA

1494 bp · TkA08G088310|TK1151|CDS

ATGTCTGAAGATGACGGGGGCTGCGGCGGTGGTAAGCTGAGAAACTCAGTTGCCGGCACCGGAGCTGAACCCGGAGAGTTTTTCACGCCGTACCCAGATCAGGTTCTTGAAAACGTACTTGAAAACGTTTTGGTTTTCCTGAAATCACGGCGTGACCGTAACGCCGTTTCCCTCGTCTGCAAATCATGGTACCGCGCGGAAGCGTACACCAGATCGGATCTATTCATCGGAAACTGTTACTCTGTGTCTCCACGGCGGGT...

Protein

Download Protein FASTA

497 aa · TkA08G088310|TK1151|PROTEIN

MSEDDGGCGGGKLRNSVAGTGAEPGEFFTPYPDQVLENVLENVLVFLKSRRDRNAVSLVCKSWYRAEAYTRSDLFIGNCYSVSPRRVMDRFKRVRSISLKGKPRFADFSLLPADWGAHFRPWASAMATAYQSLEKIYLKRMSITDEDLEMVARSFPSFKELVLVCCEGFGTSGLAIIARDCRNLRVLELIEDEVSDDETDWISCFPQEGTTNLESLSFDCVEYPINFDALERLVARSPLLKKLRLNRYVSIGQLYRLILR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G088310
TK1151 IDTkA08G088310
OH-1004 IDLXL04_031125
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.200
Protein coverage (%)TK1151 99.195 / OH-1004 82.167
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G088310
LocationChr08:22867229-22870307 (+)
DescriptionSimilar to At5g49980: Transport inhibitor response 1-like protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g49980 Transport inhibitor response 1-like protein. No verified direct reference in this release
At4g24390 F-box protein FBX14. No verified direct reference in this release
At3g26810 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
A plant miRNA contributes to antibacterial resistance by repressing auxin signaling.2006 · DOI: 10.1126/science.1126088
At1g12820 Confers sensitivity to the virulent bacterial pathogen P.syringae (By similarity). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0395600 Transport inhibitor response 1-like protein Os04g0395600. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031125 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006952 defense response Biological Process
GO:0009733 response to auxin Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0010152 pollen maturation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0048443 stamen development Biological Process
GO:0048527 lateral root development Biological Process
GO:0071249 cellular response to nitrate Biological Process
GO:0080022 primary root development Biological Process
GO:0000325 plant-type vacuole Cellular Component
KEGG gene cross-reference
ath:AT1G12820
ath:AT3G26810
ath:AT4G24390
ath:AT5G49980
dosa:Os04g0395600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.722
Rank 1 · TkA08G088310 · TK1151
Cytoplasm0.220
Rank 2 · TkA08G088310 · TK1151
Cell membrane0.071
Rank 3 · TkA08G088310 · TK1151
Endoplasmic reticulum0.044
Rank 4 · TkA08G088310 · TK1151
Plastid0.039
Rank 5 · TkA08G088310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18511F-box_533-72 aa
PF12937F-box-like39-66 aa
PF00646F-box49-65 aa
PF18791Transp_inhibit92-138 aa
PF24758LRR_At5g56370109-191 aa
PF23622LRR_At1g61320_AtMIF1125-211 aa
PF29594LRR_SKP2130-249 aa
PF25372LRR_FBXL15132-261 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G088310PF18511F-box_533722.1e-2072.7
TkA08G088310PF12937F-box-like39660.0003421.0
TkA08G088310PF00646F-box49650.1712.6
TkA08G088310PF18791Transp_inhibit921385.8e-2380.9
TkA08G088310PF24758LRR_At5g563701091911.2e-0835.6
TkA08G088310PF23622LRR_At1g61320_AtMIF11252110.01615.4
TkA08G088310PF29594LRR_SKP21302491.7e-0938.1
TkA08G088310PF25372LRR_FBXL151322612.1e-0833.7
TkA08G088310PF13855LRR_81321400.1113.0
TkA08G088310PF07723LRR_21321481.410.4
TkA08G088310PF13516LRR_61431520.009816.6
TkA08G088310PF13516LRR_61571740.009816.6
TkA08G088310PF24758LRR_At5g563701602711.2e-0835.6
TkA08G088310PF13855LRR_81802060.1113.0
TkA08G088310PF13516LRR_61811890.009816.6
TkA08G088310PF07723LRR_21841981.410.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LTX2Arabidopsis thalianasp|Q9LTX2|TIR1L_ARATH Transport inhibitor response 1-like protein73.000%Swiss-ProtHigh
Q8RWQ8Arabidopsis thalianasp|Q8RWQ8|FBX14_ARATH F-box protein FBX1472.000%Swiss-ProtHigh
Q9LW29Arabidopsis thalianasp|Q9LW29|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 252.300%Swiss-ProtHigh
Q9LPW7Arabidopsis thalianasp|Q9LPW7|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 351.300%Swiss-ProtHigh
Q7XVM8Oryza sativa subsp. japonicasp|Q7XVM8|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g039560051.100%Swiss-ProtHigh

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