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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA08G084430
Reference: TK1151 Chr: Chr08 Coordinates: 21740067-21742714 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2097 bp · TkA08G084430|TK1151|cDNA

ATATGTGTAAAATCATGTTTTTTTTTTAGATTGGGAGGGAAAGAAATTTCGCTCGTTGTTTCAATTTCAAAACACAGGGAGAAATGATAAAAGCAGTTGGCCCCACAACTGCACGCACTTTCATCATCATCTCTCGAAATCCTTTCCCCTCGTCGCATTTTTTCGATCTTACTATTTCCTCGTCACCTGAATAACTGGTTGTTTGTGATGGATTCTACTGCACAAAATCGTGTGCACCCAATCAAGCTATGGCCTCCAAG...

CDS

Download CDS FASTA

1347 bp · TkA08G084430|TK1151|CDS

ATGGTCGAAACTGTCAAACGAGGCCCTAAAATCAAACAAGAGGAAAATCAAAATCAAAATCAAAATGAAAGTCAAAGTCATCATACGTATTTTGACATTTCTGGAGGTGATCGAGCATTTCTAGATGCAGAAAAAGCACAAGAACTTCTGAAACCACTTCAAGATCCTCAAAACAAGTTTACTAAAATCTGCTTTAGTAATACAAGTTTTGGTGTAGATGCAGCCCGTGTTGCTGTTCCCATTTTGACTTCAGTCAAACA...

Protein

Download Protein FASTA

448 aa · TkA08G084430|TK1151|PROTEIN

MVETVKRGPKIKQEENQNQNQNESQSHHTYFDISGGDRAFLDAEKAQELLKPLQDPQNKFTKICFSNTSFGVDAARVAVPILTSVKHQLKEVNLSDFIAGRPEEEALEVMSMFSKALEGSNLRYLCLSNNALGEKGVRAFSELLSSQNTLEELYLINNGISEEAAKAVCELLPSTKTLKTLHFHNNMTGDEGAIAISEILKNSSLLQDFKCSSTRIGSEGGVALSNAISKCTLLEILDLRDNMFGVEAGLALSKGISVFS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA08G084430
TK1151 IDTkA08G084430
OH-1004 IDLXL04_018823
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 98.438 / OH-1004 68.799
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA08G084430
LocationChr08:21740067-21742714 (+)
DescriptionSimilar to RANGAP1: RAN GTPase-activating protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g19320 GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. No verified direct reference in this release
At3g63130 GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state.
Plant RanGAPs are localized at the nuclear envelope in interphase and associated with microtubules in mitotic cells.2002 · DOI: 10.1046/j.1365-313x.2002.01324.x
RanGAP1 is a continuous marker of the Arabidopsis cell division plane.2008 · DOI: 10.1073/pnas.0806157105

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018823 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000911 cytokinesis by cell plate formation Biological Process
GO:0006606 protein import into nucleus Biological Process
GO:0006913 nucleocytoplasmic transport Biological Process
GO:0007165 signal transduction Biological Process
GO:0007249 canonical NF-kappaB signal transduction Biological Process
GO:0031396 regulation of protein ubiquitination Biological Process
GO:0032496 response to lipopolysaccharide Biological Process
GO:0032687 negative regulation of interferon-alpha production Biological Process
GO:0032688 negative regulation of interferon-beta production Biological Process
GO:0032691 negative regulation of interleukin-1 beta production Biological Process
GO:0032695 negative regulation of interleukin-12 production Biological Process
GO:0032715 negative regulation of interleukin-6 production Biological Process
KEGG gene cross-reference
ath:AT3G63130
ath:AT5G19320
mmu:268857
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.589
Rank 1 · TkA08G084430 · TK1151
Cytoplasm0.550
Rank 2 · TkA08G084430 · TK1151
Mitochondrion0.064
Rank 3 · TkA08G084430 · TK1151
Cell membrane0.027
Rank 4 · TkA08G084430 · TK1151
Endoplasmic reticulum0.019
Rank 5 · TkA08G084430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10007DUF22503-34 aa
PF29265LRR_CARMIL23-98 aa
PF29255LRR_NLRC364-96 aa
PF27087LRR_TMOD-LMOD86-186 aa
PF12799LRR_487-96 aa
PF13516LRR_689-96 aa
PF29247LRR_MHP1-HER1-GIP3106-206 aa
PF29265LRR_CARMIL117-397 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA08G084430PF10007DUF22503340.0315.1
TkA08G084430PF29265LRR_CARMIL23982.6e-2073.3
TkA08G084430PF29255LRR_NLRC364962.5e-36126.0
TkA08G084430PF27087LRR_TMOD-LMOD861865e-1349.7
TkA08G084430PF12799LRR_487961e-0835.8
TkA08G084430PF13516LRR_689962.2e-1968.6
TkA08G084430PF29247LRR_MHP1-HER1-GIP31062063.8e-0730.3
TkA08G084430PF29265LRR_CARMIL1173972.6e-2073.3
TkA08G084430PF29255LRR_NLRC31182562.5e-36126.0
TkA08G084430PF13855LRR_81201580.1113.0
TkA08G084430PF13516LRR_61211412.2e-1968.6
TkA08G084430PF00560LRR_11211426.9e-1243.8
TkA08G084430PF12799LRR_41211591e-0835.8
TkA08G084430PF29252LRR_NLRC41322088.2e-0522.7
TkA08G084430PF13516LRR_61481692.2e-1968.6
TkA08G084430PF12799LRR_41491861e-0835.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M651Arabidopsis thalianasp|Q9M651|RAGP2_ARATH RAN GTPase-activating protein 266.700%Swiss-ProtHigh
Q9LE82Arabidopsis thalianasp|Q9LE82|RAGP1_ARATH RAN GTPase-activating protein 161.600%Swiss-ProtHigh

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